Talaromyces rugulosus: TRUGW13939_01902
Help
Entry
TRUGW13939_01902 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
trg
Talaromyces rugulosus
Pathway
trg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRUGW13939_01902
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trg03019
]
TRUGW13939_01902
Enzymes [BR:
trg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TRUGW13939_01902
Messenger RNA biogenesis [BR:
trg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
TRUGW13939_01902
mRNA degradation factors
3'-5' decay
Ski complex
TRUGW13939_01902
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
ResIII
Helicase_C
DEXQc_Suv3
Ski2_beta-barrel
OAR
CAA_C
Motif
Other DBs
NCBI-GeneID:
55989412
NCBI-ProteinID:
XP_035340992
UniProt:
A0A7H8QNQ8
LinkDB
All DBs
Position
I:join(5578095..5578330,5578399..5580910,5580970..5581246,5581304..5581491,5581547..5581726,5581786..5582286)
Genome browser
AA seq
1297 aa
AA seq
DB search
MMVDSLSSSLAELRLKADQFTAADFDAQLVEQENNPPTEQIRSRKRVRQSVDEIKSELEN
EFLTPSPTFSPDWLNRLQRRWDVSTDPRDLFEIDPTQTRAIIRFNREGLQGRVTGYHEVT
VPAASATAKNSTSLLRRPAARADFVRGAAGFFPFSPGGLEGVEAIAEMESGIQANEKERV
GGKQGLDRIINFGTEGGLLEIPPGFSRGMKFEEPKSSAAEEDNKDVEETLAREEEGIATE
NPQTEQDAKEVGDDDDETMSEDDEQDIDSLLPIEFPAFEPRSQLLAASAQKGGREWAHVV
DVNKEITNFHDLVPDMAKEWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIA
LAAKHMTKAIYTSPIKALSNQKFRDFRNIFDDVGILTGDVQISPESSCLIMTTEILRSML
YRGADLIRDVEFVIFDEVHYVNDMERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWV
GRTKKKDIYVISTAKRPVPLEHYLWAGKSMHKIVDSNKKFIEKGWKEADDILSGRDKAKA
QKAADAQAQSQASQKGAPQGRGRGRGAGGRDRGGPQRGGPQGGQGRGANRGPSTRGSGNI
ARTGRGGGRTSAAQDRNVWVHLVQYLRKENLLPGCIFVFSKKRCEENANSLSNQDFCTAS
EKSAIHMVIEKSLARLKPEDRVLPQILRLRELLGRGIAVHHGGLLPIMKEIVEILFAKTL
VKVLFATETFAMGLNLPTRTVVFSGFRKHDGKGFRDLLAGEYTQMAGRAGRRGLDTVGSV
IIVTSGRDEAPPAGALRRMILGDPTKLRSQFRLTYNMILNLLRVEALKIEEMIKRSFSEN
ATQALLPEQEKQVQLSEASLAKIKREPCSYCDIDLETCHQAAVDYEKLTRDLHLGLLTSP
VGKRLFTIKRLVVYRKDGIRTAGVIVREGIGSGEPNIQVLEIGAVSDKRHQSDILPFLPT
FRHLFRNLPTQSDGMTLKVCRVPLADVECVTNTLVKVGGPIWYLNIKKEALKFGDMELSK
YCASWEDSTWDELDWARVKELQVREILNQRQAQAAIAQSCQCLSCPDFLKHFEMQHDEWQ
VKENISQLRQLMSDQNLQLLPDYQQRVEVLRELGFVDEESRVQLKGKVACEIHSADELVL
TELILENVLAEYEPEEIVALLSAFVFQEKTENEPTLTPQLEKGKEAIVRIAEKVNEFQIL
HQVILSSEDSNDFTSKPRFGLIEVVYEWAKGMSFNRITNLTDVMEGTIVRTITRLDETCR
EVKNASKLVGDPTLYTKMQQAQELIKRDVIFAASLYM
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgatggtggattcactgtcgtcaagcttggcagagcttcggctgaaggcagatcagttc
acggctgccgattttgatgcgcagctcgttgagcaggaaaacaatcccccaacagaacag
atacgatcacggaagagggtccgacagagtgtggatgagatcaaatcggaactggaaaat
gagttcctgactccttcgcccactttcagtccggactggttgaaccggcttcagaggaga
tgggacgtctcaaccgaccctagagacctcttcgagatcgacccaactcagactcgcgcc
atcatccgattcaaccgcgaaggcctgcaaggccgggtgaccggatatcatgaagtcacc
gtaccagctgcaagtgccacagccaaaaactccacctcattgcttcgacgtcctgcggcc
cgagcggatttcgtccgaggagctgctgggttcttcccgttttcccccggcggattagag
ggagttgaggcgatcgctgagatggaatccggaatccaagcaaacgagaaggaacgtgtt
ggcgggaaacaaggcctcgatcgcatcatcaactttgggactgaaggaggcttgttggaa
attcctccgggcttttctcgaggaatgaaattcgaagaacccaaatcatcagccgccgag
gaagacaataaagatgtcgaagagacgctggcgcgagaggaagaaggcatcgctactgaa
aaccctcagactgagcaagatgctaaagaagtaggagatgacgatgacgaaaccatgagc
gaggacgatgagcaggatatagattcattgctaccaatcgaatttccagcctttgagcct
cggagccagctcttggctgcgagtgcccaaaaaggtggtcgtgaatgggctcatgttgtg
gatgtcaacaaagaaatcactaattttcacgacttggtcccggacatggcaaaagaatgg
cccttcgagctcgacacctttcaaaaagaggctgtctatcatctggagaatggagattct
gtcttcgtggcggctcatacgtccgctggcaagaccgtagtggcagagtacgccattgca
ttggccgccaaacatatgacaaaggctatctacacgtcaccaatcaaggctctgagtaat
cagaaatttcgagactttcgaaatatctttgatgatgtcggtatcttgacgggcgatgtt
caaatctcaccggaatcgagttgtctcatcatgactacggagattctccgcagtatgctc
tatcgtggcgctgatcttatccgagatgttgagtttgttatttttgacgaggtgcattat
gtgaacgatatggaacgaggtgtggtttgggaggaggtcatcatcatgcttccagaacac
gtcactctgatcctcctttcagccacggtcccaaatacatacgagtttgcttcgtgggtt
ggacgtacaaaaaagaaggatatctacgtaatttctacagcaaaacgtcctgtgcctctt
gaacactacctatgggcgggcaagagtatgcacaaaatcgtggactcaaataaaaagttc
atcgaaaagggttggaaagaagccgatgatattctttccggaagagacaaagccaaggcc
caaaaggctgccgatgcacaagcccagtctcaggctagccaaaagggcgcaccgcaagga
agaggtcggggccggggtgccggtggtcgagacagaggtggtcctcaacggggtggtccc
caaggtggtcaaggaaggggagcgaatcgaggaccctctacgagaggctctggaaacatt
gctcgaactggtcgtggtggaggaagaacttcggctgctcaggatcggaatgtatgggtt
catctcgtgcagtatctccgcaaagagaacctgttgccgggttgcatctttgtcttctca
aagaaacggtgtgaagagaatgcgaactcgctttccaatcaagacttctgcactgcgtcc
gagaagagtgctatccatatggtcatcgagaagtcattggctcgtctgaaaccagaagat
agggttcttcctcaaattttgcggctccgagaacttctcggtagaggaatagcagtccat
catggcggtcttctgcccattatgaaagagatcgttgagatcctctttgcaaagacgctt
gttaaggttctttttgcaacggaaacatttgccatgggtttgaatctgccaacccggaca
gtggtcttctctggtttccgtaaacatgacggcaaaggtttcagagatcttctggcaggt
gagtatactcaaatggcaggaagagccggaagacgaggactggacacggttggttctgtc
attattgtcaccagtggcagagacgaagcaccacctgctggggcattacgcagaatgatc
ctgggagatcctacaaagctgcggtcacaattccgcttaacatacaacatgatattgaac
cttttgcgagtggaagccctcaagattgaggaaatgatcaaaaggagcttcagcgagaat
gccactcaagccttgctaccggagcaggagaagcaggtacagctttctgaagccagtctc
gccaagataaaacgggagccatgcagctactgtgacattgaccttgaaacgtgccatcaa
gctgcagtagattacgagaaacttactcgagatcttcaccttgggcttcttacatctcca
gtgggcaaaagactcttcacgataaagaggcttgtagtctatagaaaggacgggattcgc
acagcaggcgttatcgttcgtgaaggaattggcagcggcgagcccaacatccaggtcctc
gaaataggtgccgtgagcgacaagcgccaccagagcgatattcttcctttccttcctaca
ttccgccatttattcagaaatctaccgacccaatctgacggaatgacgttgaaagtctgc
cgggtgccgttggccgatgtggagtgcgtgacaaacacgctggtcaaagttggtgggccg
atatggtatctaaatatcaaaaaggaggccttgaagtttggagatatggaattgtcaaaa
tattgcgcgtcatgggaggattcaacctgggacgagctggattgggctcgtgtcaaggag
ttgcaagtgagagagatcttgaatcagcgacaggctcaggctgctatcgcccagtcttgc
cagtgtctctcatgtcccgactttttgaaacactttgaaatgcaacacgatgaatggcag
gtcaaggagaatatctctcaattgcgacaactcatgtcagatcaaaatcttcaattgctt
cctgattatcaacagagagtagaagtgctcagggaattagggtttgtggatgaggaaagt
agagtgcaattgaaaggcaaggtggcttgtgagatccattctgccgatgaattggtcctg
actgaactcatcctcgaaaacgtactggccgaatacgagcccgaggagattgtggctctc
ttgtcggcttttgtgttccaggagaagacggagaacgaaccgacgctaacgcctcagctc
gagaagggcaaggaagcgatcgtgcgaattgcggaaaaagtcaatgaattccagatcctg
caccaagtgatcttgtccagcgaggattccaacgacttcacgagcaagcctcgctttgga
ctgattgaggttgtgtatgaatgggcgaaggggatgtcgttcaatcgcatcaccaacctt
acagatgtgatggaaggcaccatcgtccggactatcacacggctcgacgaaacatgccgt
gaggtcaagaacgcgtcgaaactggtgggcgacccgactctgtacaccaagatgcagcaa
gcgcaggagctgatcaagcgcgatgtgatttttgcggcttctctgtatatgtaa
DBGET
integrated database retrieval system
