Talaromyces rugulosus: TRUGW13939_05256
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Entry
TRUGW13939_05256 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
trg
Talaromyces rugulosus
Pathway
trg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TRUGW13939_05256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trg03019
]
TRUGW13939_05256
Messenger RNA biogenesis [BR:
trg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
TRUGW13939_05256
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
55992754
NCBI-ProteinID:
XP_035344313
UniProt:
A0A7H8QXB6
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All DBs
Position
III:join(1157017..1157185,1157244..1157271,1157331..1158120)
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AA seq
328 aa
AA seq
DB search
MDEDDDDLYDPADSFPPQQETNGHAQHGGNVNADESYEPEEEEEEEDDASFPNEKRQAPA
DAPSNLAHLRHAAVANEPLRSASADIKPPTPSIPTQLDTGAAAPVQGRPVPTLKSGAAYP
AIHTSTVDVDADPIHPTTGKPITSTDLDTDFPSEEDKPWRRPGSDITDFFNYGFDEFTWA
SYCLKQQGLRNEVTDQKKQLDDMQNFMTMGGMPGMPGAPQAPAPPAQGGGPGGMPGMSAM
PAMPGVPDMSPDMMQGMLASMMSQGLDPSAMDPMAFMQHAQAMIQPGGGQQNQGYGGQGN
QQQMGYGGGYNQQGGYGGGRGRGGGRRW
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagacgacgacgatctctatgaccctgccgactcgtttccgccccagcaggaa
accaacggccacgcgcaacatggaggaaacgtgaatgcggacgaatcctacgagcctgaa
gaagaggaagaggaagaggacgatgcaagttttccaaacgaaaaacgccaagctccggcg
gatgcgccgtcaaacctggcacatctgcgacacgctgccgttgccaatgaacctcttcga
tctgcttcagctgatataaagccccccactccgtcgattcctacacaactcgatactggt
gcagcggcccctgttcaaggcagaccagtaccgacactgaaatccggcgccgcataccct
gccatccacacgtccacggtcgatgtcgatgccgatcctattcatccgactaccggaaaa
ccaatcacatcaacagacctggacacagactttccctcagaagaagacaagccgtggagg
aggcccgggtcagacattacggacttttttaactacgggtttgacgagtttacgtgggct
agctactgcctcaagcagcaaggtctgcgcaacgaggtcactgaccagaaaaagcagctg
gacgacatgcagaatttcatgacgatggggggaatgcctgggatgccaggtgctccacaa
gctccagctccgccagctcaaggcggaggtcctggagggatgcctgggatgtcggccatg
ccggccatgcccggtgttccagacatgtctcccgatatgatgcagggaatgcttgccagt
atgatgtcccaagggctggacccgtcggcaatggatccaatggctttcatgcagcatgcc
caggcaatgatacagcccggcgggggacagcagaaccaaggttatggaggacaggggaac
cagcagcaaatgggatatggtggtggttacaaccaacagggaggatacggtggaggcaga
ggacgagggggtggacgcagatggtga
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