Talaromyces rugulosus: TRUGW13939_05466
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Entry
TRUGW13939_05466 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
trg
Talaromyces rugulosus
Pathway
trg03040
Spliceosome
trg04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TRUGW13939_05466
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
TRUGW13939_05466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
trg03041
]
TRUGW13939_05466
04121 Ubiquitin system [BR:
trg04121
]
TRUGW13939_05466
03400 DNA repair and recombination proteins [BR:
trg03400
]
TRUGW13939_05466
Enzymes [BR:
trg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
TRUGW13939_05466
Spliceosome [BR:
trg03041
]
Complex B
Other components
Prp19 complex
TRUGW13939_05466
Complex C
Prp19-CDC5 complex
TRUGW13939_05466
Ubiquitin system [BR:
trg04121
]
Ubiquitin ligases (E3)
U-box type E3
TRUGW13939_05466
DNA repair and recombination proteins [BR:
trg03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
TRUGW13939_05466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Prp19
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
Beta-prop_EML_2
WD40_WDHD1_1st
WD40
Beta-prop_WDR3_1st
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
EIF3I
WDR55
WD40_Gbeta
Beta-prop_WDR19_1st
B-prop_COPA_B_2nd
Beta-prop_WDR3_2nd
Beta-prop_TEP1_2nd
Beta-prop_Aladin
Beta-prop_WDR90_POC16_2nd
Beta-prop_NUP159_NUP214
KNTC1_N
WD40_MABP1-WDR62_1st
Beta-prop_EML
Beta-prop_IFT140_1st
eIF2A
WD40_MABP1-WDR62_2nd
PEP5_VPS11_N
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_RIG_2nd
V_ATPase_I_N
Beta-prop_SCAP
WD40_like
Tricorn_2nd
Cytochrom_D1
zf-Nse
Beta-prop_VPS8
U-box
Beta-prop_IFT122_2nd
PT-TG
Motif
Other DBs
NCBI-GeneID:
55992963
NCBI-ProteinID:
XP_035344522
UniProt:
A0A7H8QW99
LinkDB
All DBs
Position
III:complement(join(1748443..1748906,1748965..1749428,1749487..1749928,1749987..1750031,1750090..1750102))
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AA seq
475 aa
AA seq
DB search
MLCAISGEAPQVPVVSTKSGNVFEKRLIEGYISENGKDPVTGEELSTDDLVELKSSRTVR
PRPPTLTSIPSLLGVFQEEWDALALETYTLRQSLVQTRQELSTALYQNDAAVRVIARLTK
ERDEARDALSKISVGSARGPSAGDAMQVDSVGLPDSVVSRINETQASLSKSRSKRPIPEG
WATGDSIQSYQPAASSEPLYPGGKSLSVNSTGDLALVGGVDGIAGIYSIAKQQVVQTLKA
DGPVTDAVFAGSKAVVASATGSVKFFENGAETASFASHAGEVTAVAVHPTGDIIGSVGVD
KSYVLYDAATSSVVAQVYGSAGLLSAKFHPDGHLLAVGGADGQIHVYDVKSGTPAATFPM
SAPVTQVEFSENGYFMAAVTENSTDISIWDLRKSKIHKVLPTGTQITSLSWDYTGQFLLS
GGPNGLTVQQYNKSAKDWSESLRSAVPAVGVAWGHLAQSVVTVNGEGVVSVLAQS
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgtgcaatctcgggcgaagcgccgcaggtgcctgtcgtgtccacaaagagtggc
aacgtgttcgaaaagaggcttatagaaggatatatttctgaaaatggcaaggatcctgtc
actggagaggagttgtccacagacgacttggtcgaattgaaaagttcgcgcaccgttcga
cctcgtccgcccaccctcacctcgattccttcgcttctcggtgtttttcaagaggaatgg
gacgcgctggccttggaaacgtatactctccgccagtctttggttcagacacggcaagag
ctgagcacggccttgtaccagaacgatgctgccgtgcgagttatcgcccgcctgactaaa
gagagggatgaggctcgcgatgccctctcaaagatctcggttggatcggctcgcggccca
tcggctggcgacgctatgcaggttgacagtgttgggcttccggattcggtggtcagcaga
atcaacgaaacacaggcttcgctttccaagtcgagaagcaagcgtccgattccagaggga
tgggctacgggggattcgattcagtcataccagcccgcagcgagctcggaacctttgtat
cctggaggaaaatcgctttcagtcaactctaccggagacctcgcgctggtcggcggtgtc
gatgggatcgccggtatctattctattgcgaaacaacaagttgtgcaaaccctcaaggcc
gatggaccagtcacggacgcagtctttgctggctccaaggctgttgtggcttctgcgacc
gggtctgtgaaattcttcgagaatggcgccgaaactgccagctttgcctctcatgcaggc
gaggtcactgcagtcgccgtccaccctactggcgacatcattggctccgttggtgtcgac
aagagctacgtgctgtatgatgcagcgacctcgtcagttgttgcgcaggtctacggcagt
gctggtttgctctctgccaaattccaccctgatggccacttgcttgctgttggtggcgcg
gacggacagattcatgtgtacgacgtcaagtcaggcactccagcggctacattccccatg
tctgcgcctgttacccaggtcgaattctccgagaacggctacttcatggccgccgtcaca
gaaaactcaaccgacatctccatatgggatctgcgcaaatccaagatccacaaggtccta
ccgaccggcacccagatcacgtctctttcctgggactacacgggccagttccttttgagt
ggtgggccaaatggactgaccgttcagcaatacaacaaatccgcaaaggactggtcagag
tcccttcgcagtgccgtgccagccgtgggagttgcttgggggcacttggcacaaagcgtc
gttaccgtgaatggcgagggcgtagtctctgttctggctcaatcatga
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