Talaromyces rugulosus: TRUGW13939_05632
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Entry
TRUGW13939_05632 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
trg
Talaromyces rugulosus
Pathway
trg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TRUGW13939_05632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
trg03041
]
TRUGW13939_05632
03009 Ribosome biogenesis [BR:
trg03009
]
TRUGW13939_05632
Enzymes [BR:
trg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TRUGW13939_05632
Spliceosome [BR:
trg03041
]
Complex A
U2 snRNP components
U2 related factors
TRUGW13939_05632
Complex B
TRUGW13939_05632
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
TRUGW13939_05632
Ribosome biogenesis [BR:
trg03009
]
Eukaryotic type
90S particles
Helicases
TRUGW13939_05632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
Helicase_C
HA2_N
AAA_22
SRP54
AAA_19
Flavi_DEAD
T2SSE
AAA_7
ResIII
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
55993129
NCBI-ProteinID:
XP_035344686
LinkDB
All DBs
Position
III:join(2212429..2212724,2212787..2214653,2214706..2214834)
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AA seq
763 aa
AA seq
DB search
MVDGQSGREDGSRAKRQKTDKAEMDPRANPYLAHMYPEENGSRSSQNGPFAGFTRHQTTA
ALAQKAEDGDLNPFNGRPFSSTYMSILKTRRNLPVHAQRNEFLKLYQESQILVFVGETGS
GKTTQIPQFVLFDDLPQSQRKMVACTQPRRVAAMSVAERVAAEMDVKLGEEVGYSIRFED
MTSQKTILKYMTDGMLLREAMNDHNLQRYSTIILDEAHERTMSTDILMGLLKEVVLRRPD
LKIIIMSATLDAQKFQRYFSDAPLLAVPGRTHPVEIFYTPEPEQDYVEAAIRTVLQIHAT
EPDGDILLFLTGEEEIEDAVRKISLESEEMVREADAGPMKVYPLYGSLPPHMQQRIFEPA
PGPRKPGARAGRKCIVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISK
ASAQQRAGRAGRTRPGKCFRLYTEAAFKKELIDQTYPEILRSNLSSTVLELKKLGIDDLV
HFDLMDPPAPETLMRALEELNYLACLDDNGDLTQLGRLASEFPLDPALAVMLATSPEFYC
SNEILSITALLSVPQVFTRPHAQRKRADEMKNLFAHPDGDHLTLLNVYHAFKGPEAQANP
KQWCHDHFLSLRALQSADNVRLQLLRIMEREEVELISTPFDDKKYYENIRRALVAGFFMQ
VAKKESTGKSVYTTVKDNQSVLLHPSTVLGYDAEWVLYNEFVLTTKNYIRTITSVKPEWL
LEISPVYYDISTFPKGDIRSALLRAGDRLARKDKMRSDSSKRR
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggttgacggacaatctggaagagaagacgggtcgcgcgcaaagcgacagaagaccgac
aaggccgaaatggatccccgcgcgaatccctacctggctcatatgtaccccgaagaaaat
ggaagccggagctctcaaaatggcccattcgccggctttacgagacaccagacaactgct
gcccttgcgcagaaggccgaggatggagatttgaaccctttcaatggtcggccgttttcc
tccacgtatatgtcgatcttgaaaactcgacgcaaccttccggttcatgcgcagagaaac
gagtttttgaagctgtaccaggaatctcagattcttgttttcgtcggtgaaaccggttca
ggaaaaacaacgcagatccctcagttcgtcctattcgatgaccttccccaatcccagcgc
aagatggtcgcgtgtacccagccacgacgagttgctgccatgtctgtggcggagcgtgtt
gccgctgagatggatgtgaagctaggcgaagaagttggttacagcattcgtttcgaggac
atgactagccagaagactattctcaaatacatgactgatggaatgcttctccgagaagct
atgaatgaccacaacctccagcggtatagcacaatcatcctcgacgaagctcatgaacgt
acaatgtctacggatattcttatgggattgctgaaggaggtggttctgcgccgacccgat
ttgaagatcatcatcatgtctgccactctcgatgcacagaagtttcagcgttactttagc
gatgccccgttgctggctgtcccaggaagaactcaccccgtggagattttctatacccct
gaaccagagcaggattatgttgaagcggcaattcgcactgtactgcaaatccacgcaacg
gagccggatggagacatcctattgtttttaacgggtgaagaagagattgaagatgctgtt
agaaagatctcactggagtcggaggaaatggtgagagaggccgatgccggcccaatgaag
gtctatccattgtatggcagcctgcctccacatatgcagcaacgcatcttcgagccagct
ccgggcccacgcaaacccggtgctcgtgctggtcgcaagtgtatcgtgtcgacaaacatt
gctgagacgtcactcaccattgatggtattgtttatgtcgtggatcctgggttttccaaa
cagaaagtttataaccctcgtattcgggtcgaatccctgctcgtgtcaccaatatcaaaa
gcgtctgctcagcagcgtgctggccgtgctggccgtacccgccctggaaaatgctttcgt
ctatacactgaggctgcttttaagaaggaacttatcgaccaaacttatcctgagattctc
cgatcgaacttgtcttctaccgtcttggaactgaagaaactgggcattgacgatctggtt
cacttcgacctaatggatcctcctgcaccagaaacactaatgagagccttggaagaactc
aattacctagcctgtcttgatgacaatggagatctgacccaattgggacgcctggcatct
gaattccccctcgacccagcgcttgccgtaatgctggcaacatcaccggagttctactgc
tctaacgaaatcttgtctatcaccgcccttctttcggttccacaggtatttacacgaccg
catgctcagcggaagcgagcagatgagatgaagaacctgtttgcccatccggatggtgat
catttgacgttgctaaacgtataccacgcgttcaagggccccgaggcgcaagcaaacccg
aagcaatggtgccacgatcacttcctgtccctccgtgctctacaatctgcagacaatgtg
cgacttcagttgttgcgtatcatggaacgcgaggaagtcgaactcatctctactccgttt
gacgacaagaagtactacgagaacattcgacgagctttggttgccggctttttcatgcag
gtggccaagaaggagagcacagggaaaagcgtctacaccaccgtgaaggacaaccagagc
gtgctcttgcacccaagtactgtcctgggttacgatgccgagtgggtgctctacaacgaa
ttcgtcctcaccaccaagaattacattcgaacaatcacatctgtgaaaccagaatggctt
ttggaaatttcacccgtttactacgatatctcaacatttccaaaaggggatatccgatct
gctcttctccgcgcgggcgatagacttgctcgtaaagacaaaatgcgtagtgactctagc
aagcgccgttga
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