KEGG   Talaromyces rugulosus: TRUGW13939_05846
Entry
TRUGW13939_05846  CDS       T06879                                 
Name
(RefSeq) uncharacterized protein
  KO
K12571  PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:3.1.13.4]
Organism
trg  Talaromyces rugulosus
Pathway
trg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:trg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TRUGW13939_05846
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:trg03019]
    TRUGW13939_05846
Enzymes [BR:trg01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     TRUGW13939_05846
Messenger RNA biogenesis [BR:trg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     TRUGW13939_05846
  mRNA degradation factors
   3'-5' decay
    Pan complex
     TRUGW13939_05846
SSDB
Motif
Pfam: UCH_1 PAN2_N RNase_T UCH Beta-prop_THOC3 Beta-prop_WDR3_2nd WD40_CDC20-Fz WDR55
Other DBs
NCBI-GeneID: 55993343
NCBI-ProteinID: XP_035344897
LinkDB
Position
III:complement(join(2850722..2851676,2851728..2852840,2852892..2854189,2854261..2854389))
AA seq 1164 aa
MEADWDEVSRIAVPPPGPHALPTAATAIAFDDIQELLWAGNEYGRITSFYGPELQRYTSV
RAHPVSEGSVRQLLFHEKGVISISSKSVHMVTRRGLTQWHITHTDMLDLRCISFTAQTNR
VIVAGCQTSMFTIDIDKGVIIDKLPTEHNYTIMKKSRYLCAATDTGSVNALSLADFKIVK
SWKAHGAAINDMDARNDFLVTCGFSVRHLGAPIVDPLANVYDLKTLTPLPPIPFHAGAAY
VRMHPRLHTTSFVASQSGQLQVVDLMNPNTINLRQANVNFMLGMEISPSGEALAINDAEF
AIHLWGSPSKIHFNEMSKETEFADVVPQSQMVDWSLDTPLNAIGMPYYHDRLFSAWPSHL
VFDSGSPPAPVDPSIIPYLRPAELGHFAANPKKGRRYQVENIRQLVSAEPALAAPKFLSE
KARESPRNRSDGAVGDVSDALQSAKIGGEVEEDPLLKYSNVEIKYSRFGVDDFDFRYYNK
TIFSGLETHISNSFTNSLLQLYKFIPLVRNLALNHAASSCVIEECLLCEMGYLFDMLDKA
NGQNCQATNLLKTFSGYREASKLGLLEENLTNKALSAAIQSVNRFVLNQVANDHRAISPE
SDELDRNLATIASESIRCMFCRNEIIRPGNAFANELIYQAPDIKQARRSALMKFSTILKT
SIERETQNRGWCNHCRRYQQVAIRRTVHRMPPVLMLNTGPTNHFRHLWATPGWLPEELGI
VVENGQLHTFEGDDLRNRIQNKTPGLTVYELVGLVTEIDITEHQKPHLVSFINVSVSSRQ
WEEKNRWHLFNDFLVTEVTKEEALRFTDTWKIPSVVAYQVKSARHKVDDTWKDKLDTTLL
FHEWSMNGGQIIDSCHILTPQERPQTGTPVALDTEFVDLEKAEIDVKADGSQEMIRPSKS
GLARVSVLRGSGLHEGVPFIDDYITIKETIVDYVTQFSGIKPGDLDPRTSQHNLVPLKVA
YKKLWVLLNLGCIFVGHGLASDFRKINIQVPKAQTVDTQYLFFHPAKNRRLSLRYLAWAV
FKEYIQEETPDVTEGHDSIEDARMALRLWKKFQEYEDAGIVNQILEEIFSQGFKLSFRPP
QRNGNPAVALNRPGTAVAANNNSTNVSGRNTPDLSSSNVTSSAAGNSTPSTPRQAFRRAN
ALTPSNGTFGAPGQPDFLGGSPLR
NT seq 3495 nt   +upstreamnt  +downstreamnt
atggaggccgattgggatgaggtatcgcggattgcggtccctcctccgggcccgcatgcc
ctacctacagctgcaactgccattgcatttgacgacattcaggaactgctatgggcaggc
aatgaatatggacgaatcacctccttctacggccccgagctccaaagatatacctccgtg
cgagcccatccggtgtcagagggctctgtacgacagctcctctttcatgaaaagggtgtc
atatctatatcgtccaaaagtgtgcatatggtgacccgccgaggactcacacaatggcat
atcacccacaccgatatgctcgacctccgctgcattagtttcaccgcacagacaaaccga
gtcattgttgcaggctgccagacatccatgttcactatagatattgataaaggggtgata
attgacaagctaccaaccgagcacaactacaccatcatgaagaagagccgatatctctgc
gctgccactgataccggctcggtgaatgcactcagcctagcagattttaagatagtcaag
agttggaaggctcatggagctgcaattaacgatatggatgctcggaacgattttttagtc
acctgtggcttctccgtacgacatctgggggctcctatcgtcgaccctctggcaaatgta
tatgacctgaagacattgacaccactacctccgattccatttcatgccggtgcggcctat
gtacgcatgcacccccgacttcacacaaccagttttgttgcctctcaatcggggcagctg
caagtggttgatttgatgaaccctaataccatcaatcttcgccaggcaaatgttaacttc
atgctgggtatggaaatatctccctcaggagaggctttggcgattaatgacgccgagttc
gcgatccatctttggggatctccaagcaagatccattttaatgaaatgagcaaagagacc
gaatttgccgacgtggtacctcagtcacaaatggttgattggtcgctggacacgcccttg
aatgcaattgggatgccatattaccacgatcgtctattttcagcttggccgagtcatctc
gtctttgattctggaagtcctcctgctccagtggacccttccattataccctaccttcga
ccggcagagctaggtcattttgccgcaaaccctaaaaagggccgccgctatcaagttgag
aatatacgccagctggtttcagccgaaccagctctggcagcgccaaaatttctgagtgaa
aaggcgcgcgagtcacctagaaacaggagtgatggagctgtcggggacgtttcagacgcc
cttcaaagtgcaaaaatcggcggtgaagtagaggaagatcctctgctcaaatatagtaac
gttgaaatcaaatacagcagatttggggtggacgatttcgatttcaggtactataacaag
accatattctccgggttggagactcatatatcaaattccttcaccaattccctactccaa
ttgtacaagttcattcctctagtgcgaaacctcgcattgaatcatgctgcgagcagctgt
gtcattgaagaatgtcttttgtgcgaaatgggatatctttttgacatgctggataaagcc
aacgggcaaaattgccaggctacaaatctcctcaagacctttagcggttatcgcgaggct
tctaaactcggcctgctagaagaaaaccttacgaacaaggccctatcagcggccattcaa
tctgtcaatcggtttgtgttgaaccaagttgccaatgaccatcgtgccattagccccgag
tcagacgaacttgatcgaaacctcgccacaattgcatctgaatcgattcgatgcatgttc
tgccgaaacgaaatcatccgaccaggcaacgccttcgctaatgagctcatctaccaagcc
cctgatatcaaacaagctcggcgaagcgccttgatgaaattttctaccattctgaagaca
agtatcgaacgggaaacacagaaccgaggttggtgcaaccattgcagacgctaccagcaa
gtcgcaattcggaggacagtgcatcgcatgcctcctgtgttgatgctgaacacagggccc
acgaatcatttccgtcacctttgggctactccaggatggctacccgaagaattgggcatt
gttgttgaaaacggccagctgcacacctttgaaggcgacgaccttcgcaatcgcatacaa
aacaaaacccccgggctaacggtgtacgagctagttgggttggtgaccgaaattgacata
acggaacatcagaaaccacatctagtctcttttattaacgtcagcgtatcttcccgccaa
tgggaagagaaaaatagatggcacctttttaacgactttttggtcacagaagtgaccaag
gaggaggcactgaggtttacggatacttggaaaatacctagcgtggtggcatatcaagtc
aagagtgcaaggcacaaggttgacgatacgtggaaagataaactggataccacattgcta
ttccacgaatggtctatgaacgggggccaaatcatcgattcttgccacatcctcacaccg
caggaacggcctcaaacaggcacaccagttgccctcgacactgaattcgttgatttggaa
aaagccgagattgacgtcaaagccgatggatctcaggaaatgattcgacccagcaagagc
ggtctcgctcgagtgtcggttttgaggggctcgggattgcatgaaggagtcccttttatt
gacgactatataaccattaaagaaacgattgtcgattatgtgacccagttctctggtatc
aagccgggagatttggatcctcggaccagccaacacaacctggtacctttaaaggtggcc
tacaagaagctgtgggtgttactgaacctgggttgcatctttgtcggccatggtctggca
tcggactttcgcaaaatcaacatccaagtacccaaggcacaaaccgtggacacacagtac
ctcttcttccatccagccaagaaccgtcgtttgagcttgcgatacctcgcatgggctgta
ttcaaagagtacatccaagaagaaacccccgacgtgaccgaaggccacgactcaatcgaa
gacgctcgcatggctctacgcctctggaagaagttccaagaatacgaagacgcaggcatc
gtcaaccagattcttgaagagatattttcccagggattcaaactcagcttccgcccgcct
caacgaaacggcaacccagctgttgcgctgaaccgtccaggtacagccgtcgctgccaat
aataactctacaaacgtcagcggacgcaacacgcctgatctctcgagcagcaatgtgact
tcctcagcggctgggaacagtactccgtctactccacgccaggcatttagacgggcgaat
gcattgactcctagcaacgggacctttggtgcccctggccagccggactttttgggcggg
agtccgttgcgatag

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