Talaromyces rugulosus: TRUGW13939_06142
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Entry
TRUGW13939_06142 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
trg
Talaromyces rugulosus
Pathway
trg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TRUGW13939_06142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
trg03041
]
TRUGW13939_06142
Enzymes [BR:
trg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TRUGW13939_06142
Spliceosome [BR:
trg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
TRUGW13939_06142
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
WHD_HA2
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
Cas3-like_C_2
SRP54
AAA_30
Motif
Other DBs
NCBI-GeneID:
55993638
NCBI-ProteinID:
XP_035345191
UniProt:
A0A7H8R2F2
LinkDB
All DBs
Position
III:join(3886831..3890035,3890089..3890181,3891137..3891563,3891620..3892199)
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AA seq
1434 aa
AA seq
DB search
MDTRTFVSDSLLRLTGASEPTVIDFVLATAGDAKSQASLRDKLSTFLELDDNEIESFSAD
LYGRLTASKRGRPPKEKTPAAPADSKKKYRLVEMQDDFQEDNNHGPANVEADRRRRREKD
RPRESKRDARTRWEDDEDSHRDDHSRKRSRSRDTENRDRNRRSKKLRKRDADDFEDRWGD
EEKPEDGYGDDAPQDDELVAEGSASPRSTSSAGLDEEGKAERARQRDLKERDEFAKRLVD
KESSKSKKKLVEDRTRRAGDQSRRALADDAQARSEAMPDIRMRSRQEYLKKRETERLALL
RRQVAEEAIELRENPTISRREKEEFARNREVLRIAEERLRIDDHRDGYMMPDDYITEKGK
IDRKKKEEALYKRYVDRDEQGQERFVTEQEEWEREQTAKAKAQISRAEYVDEGDYDYVFD
DAQKINFIMDSKLEGDGKFMTKDQRMLQQQLDAAEKKAASIEETRKSLPIYQFRDELIQA
VHDHQVLIIVGETGSGKTTQIPQYLHEAGFTKNGMKIGCTQPRRVAAMSVASRVADEMGV
KIGNEVGYAIRFEDNTSDKTVLKYMTDGMLLRELLTEPDLGGYSALMIDEAHERTVPTDI
ACGLLKDIAKARPDLKLLISSATMDAQKFQRFFNNCPIMNIPGRRYPVDIHYTSQPEANY
LAAAITTVFQIHITQGPGDILVFLTGQEEIEAAEQSLQETARKLGGKIPEMIIAPIYANL
PSELQTKIFEPTPPGSRKVVLATNIAETSLTIDGIVYVIDPGFVKENVFNPRTGMESLVV
TPCSRASAGQRAGRAGRVGPGKCFRLYTKWAYHNELEENTTPEIQRTNLNGVILMLKSLG
IDQLLDFDFMDPPPAETIIRALEQLYALGALNDRGELTKIGRQMAEFPTDPMLSKSILAA
DKYGCVEEVLSIISMLGESSALFFRPKDKKIHADSARARFTIKEGGDHLSLLNIWNQWVD
SDFSFVWAKENFLQQRSLTRARDVRDQLAKLCDRVEVTVSSCGANNIVPIQKAITAGFFP
NAARLQRGGDSYRTVKNNQTVYLHPSSTLFEVNPKWVIYYELVLTSKEYMRNIMPLQSDF
LLEAAPHYHKKKDLETLGLVSGHACKLGEEFTTRAVPLIITANRPSSIHWKKRLASLKNA
QPNTISGVVDSQEPVADESKYIVIGVVPVGFEDESLWPKPSRTKNLGTKVSEDCARPVPG
KLAHRVVAQLPLTPGKSIKLYALLDQERISGLYNPPASDRIMFWNNRVAGLADLSAPGPA
NFDPVRRGQARPVFVSEERSHFITDLKLATSQFMVSSLIEPLEKLIGDFHESELPLFSAL
DRFADKNPKALEYTTKDAEDLHQQIMARWPSITPISPSRLLALHEALCQAESVLEPRDGL
QFVVLGYASLANEPDNAPEVTSNLLRFLELGIQSLGGPGDGRQGHEPKVLIISE
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atggatactcgcaccttcgtttccgactccctcctccgtttgacgggcgcgtccgagccg
actgttatcgattttgtcctcgcgacagccggcgacgccaaatcccaggcatcgctgcgc
gacaagctcagcacatttttggagctggacgacaatgagattgagtcgttttcggcagac
ttgtacggccggttaacagcatctaaacgcggccgaccccccaaagaaaagacgccggcg
gcgccggcggattcgaagaagaaataccggctagttgagatgcaggatgatttccaagag
gataataatcacggtcctgcgaatgtggaggcggataggcgcaggcgcagggaaaaggac
aggcctcgcgaatcaaagcgtgacgctcgtacgcgctgggaagacgacgaggactcgcac
agggacgaccacagccggaagagaagcaggagtcgggacaccgaaaaccgcgaccggaac
cgccgttcaaagaaactccggaaacgcgatgctgatgattttgaagatcgctggggcgat
gaggagaaacccgaggacggatatggcgacgacgcaccacaagacgacgagctcgtggca
gaaggctctgcatcgccgcggtcaacatcatctgctggactggacgaggaaggcaaggcc
gaaagagctcgacagcgcgacttgaaagagcgtgatgaattcgccaagcgtctcgtggac
aaggaaagctccaaatcgaaaaagaaacttgtcgaggatcgcactcggcgcgcgggcgac
cagtctcgtcgtgcgctcgccgatgatgcacaagcaaggagtgaagccatgccagatatt
cgtatgcggtctcgccaggaatacttgaagaaacgagagacggagcgactagctctcctg
cggagacaggttgcagaggaagccattgagctccgagagaatcccactattagtcgccgc
gagaaggaggaattcgcaaggaatcgtgaagttcttcggatcgccgaggaacggctgcgc
attgacgaccatcgcgatggctatatgatgccagacgattatattacagaaaagggaaag
attgatcggaagaagaaagaggaagctctctacaagcgatacgttgaccgcgatgagcaa
ggacaggagcgttttgtcacggaacaagaggagtgggagcgcgagcaaacagcaaaggca
aaagcacagatctcccgggccgagtatgtggatgaaggcgattacgactatgtctttgat
gatgcgcagaaaatcaattttatcatggactccaagttggaaggagacggcaaatttatg
accaaggaccaacgaatgttgcaacagcagctcgacgcagcagagaaaaaggctgcttcg
atcgaggaaacgcgcaaaagccttcctatttatcaattccgcgatgaacttatccaagcc
gttcatgaccaccaggttcttatcattgtcggagaaaccggttccggtaaaacgacccaa
atccctcaatatctacatgaagccgggtttaccaagaatggaatgaaaatcggatgcaca
cagcctcggcgagtggctgcaatgagtgttgcctcccgtgtcgctgatgaaatgggggtg
aagataggcaatgaagtgggttatgctattcgatttgaagacaataccagtgacaagaca
gtcctcaaatacatgacggatggtatgctgttgcgagaactcctgacagaacctgaccta
ggtggttactcggcactgatgattgatgaggctcacgagcggactgtgcctactgatatt
gcttgtgggttgcttaaagatattgccaaagcccggccggacttgaagcttttgatttct
tcagcaacgatggatgctcaaaagttccaaaggttctttaacaactgtcctataatgaac
atacctggtcgaaggtaccccgttgatatccactatacctcgcaaccagaggcaaactac
ctcgctgccgccatcacaacggtgtttcaaatccatatcacgcaaggcccaggtgacatc
ttggtgtttttgaccggccaagaagaaattgaagccgcagagcagagtctgcaagaaaca
gcgcgcaagctgggtgggaagataccagagatgatcattgcgccaatctacgcaaactta
ccttccgagttacaaaccaaaatctttgagcccacgccgccggggtcaagaaaggtggtg
ctagctacgaacattgccgaaaccagtttgaccattgacggcattgtctatgtcatcgac
cctggcttcgtcaaggaaaatgttttcaacccccgaactgggatggaaagcctggtcgtc
actccctgttcgcgagcatcggctggacaacgtgccggacgagccggtcgtgtcggccct
ggaaaatgttttcggctgtacaccaaatgggcttatcacaatgagttagaggagaacacg
actcccgagatccagcgtacgaatctgaatggcgtgatcctgatgctaaagtcgctgggc
attgatcagctgcttgatttcgatttcatggatccgccgccagcggagacgataattcgg
gctctggaacagctgtatgcgctgggggccctgaatgaccggggcgaactcaccaagatt
ggaaggcagatggccgaattccctactgatccgatgctttccaagtccatcctcgcagcc
gacaaatatgggtgtgtggaggaggtgttgtcgatcatctcgatgctgggcgagtccagc
gctctattcttccggcccaaggacaaaaagatccacgccgacagtgccagggcccggttc
accattaaagaagggggtgatcatctaagtctgctgaatatctggaaccagtgggttgac
tcggactttagcttcgtctgggccaaagagaactttctgcagcaacgcagtctcacgcgg
gctcgagatgtgcgcgatcagctggcgaagctgtgcgatcgagtcgaggttacggtgtcg
tcttgtggagcaaacaacattgttcctatacaaaaggccatcacagctgggtttttccct
aatgcggcacggctgcagcgtggtggcgatagctaccgcacggtgaagaacaaccagacg
gtgtatctgcatccatccagcacgttgtttgaggtcaatccgaagtgggttatttattac
gagctggtgcttacgagcaaagagtacatgcgcaacattatgccgttgcaaagcgacttt
ttactagaggcggcgccgcattatcacaagaagaaggatttagagacgctgggtttggtg
tccggtcatgcatgtaagctgggcgaagaattcaccaccagggccgtaccattaatcatc
acggcaaaccgcccttcttccatccattggaagaaaaggctcgcctcgttaaaaaatgcc
cagccaaacacaatcagcggggtagtcgattcacaggagccggtggcagacgaaagcaaa
tacatcgtcatcggtgttgtcccagtcggcttcgaagatgaatctctctggccaaagcca
agccgcaccaagaacctcggaacgaaagtttcagaggactgcgctcgccctgtccccgga
aagctcgcccaccgtgtcgtcgcccagcttcccttgacccccggcaagagcatcaagttg
tatgccttgctcgaccaggagagaatctcgggcctgtacaaccctccggcatcggacagg
atcatgttctggaataatagggttgctgggctggccgacctttctgcaccggggcccgcc
aatttcgaccccgtacgcagggggcaagccaggcctgtgttcgtatccgaggagaggtcc
cacttcatcacagacctcaaactggcgaccagccagttcatggtctcttccctcatagag
cctctggaaaagcttattggggactttcatgagtccgagctccctctcttcagtgctcta
gaccgcttcgccgacaagaaccccaaagccctggagtacacgaccaaggacgccgaagac
ttgcaccagcagataatggcgagatggccatcaatcaccccaatctcgccatcacgcctc
ctcgctctccatgaggccctctgccaagctgaatcggtcctggaacctcgcgatggcttg
cagtttgttgttctcggctacgccagtctggcaaatgagccagataacgccccagaggtt
acaagcaaccttctgcgcttcttggaacttggaatacagtctctcggggggccgggcgat
ggccgtcagggccacgagcccaaagttttgattatatcagagtag
DBGET
integrated database retrieval system
