Talaromyces rugulosus: TRUGW13939_06219
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Entry
TRUGW13939_06219 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K15542
polyadenylation factor subunit 2
Organism
trg
Talaromyces rugulosus
Pathway
trg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TRUGW13939_06219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trg03019
]
TRUGW13939_06219
Messenger RNA biogenesis [BR:
trg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
TRUGW13939_06219
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR3_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_TEP1_2nd
WDR55
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Beta-prop_RIG_1st
Beta-prop_HPS5
MIOS_WD40
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_WDR41
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
WD_LRWD1
Beta-prop_VPS8
Beta-prop_DCAF4
Beta-prop_NUP159_NUP214
Beta-prop_ACSF4
PAN2_N
Motif
Other DBs
NCBI-GeneID:
55993714
NCBI-ProteinID:
XP_035345266
UniProt:
A0A7H8QZH4
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Position
III:join(4140700..4140790,4140844..4140959,4141011..4141211,4141268..4142641)
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AA seq
593 aa
AA seq
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MAAYEESGGDGSYGGRPSRPYEGSAGPRRPRPVTDYGSSMVQWMRTRRPRYKGTHRMEVE
RPSASYAVDVLPPLARVHSPADTIPVRHLHQSIGKSKKPITVVRWTPEGRRLLTGGHTGE
FMLWNGTAFNFETVMDAHYDQYQAGVTSAAWSHSHDWLISGGQKGDVKYWRPNFNNVETV
DDAHHDAVRDLAWGPSDTKFLSASDDTTLKIFDFTARACDTVLTGHNWDVKSCDWHPTKG
LLVSGSKDHQVKFWDPRTGRCLTTLHSHKNTVTTTRFSRVNHNLLATSSRDSTARVFDLR
MMRDICILRGHEKPISSLTWHPVHSSLISTGSEDGSLYHYLLDEPNQPPGQVPTVAPYDS
NDPLNTPPQVVYPAHRIQYAHGSTIWSLHWHPMGHILASGSKDNFARFWSRARPGETAYL
KDRFHIGEEAAEAQGTWNRGFGKKQMREEEEQELEDEADGLVDQRAAAPTLPGIQGLPGI
SSDGGPMGLLPGIGNPQPPPQPNMAPGTNQLASMLGVSSLPPVAHGNYAPPQPPPNMGFP
GLGFGPQATATPPPVPPANLNPNLNLAALQKQLLAQGVTLPANFANPSAWNRG
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggccgcctacgaggagtctggcggcgacggttcctatggcggacggccgtcaagacca
tacgaaggcagcgcgggtcctcgcaggccaaggccggtgacggattatggctcgtcaatg
gttcagtggatgcgtacacgacgaccgagatacaaaggaactcatcgtatggaagttgaa
agaccgagcgcgagttatgcagttgatgtactgcctccgttagccagggtacactcgccg
gccgatacgattcccgtgcggcatctgcatcaatcgatcggaaaatcaaagaaacccatt
accgtcgtgaggtggacgccagaaggtcggcgacttcttactggtggacacacgggggag
tttatgctatggaatgggacagcctttaatttcgagacggtgatggacgcccattacgac
caatatcaggccggtgtcacatctgctgcctggtcgcatagtcacgactggctcatctcc
ggcggtcaaaagggagatgtaaagtactggcgacccaactttaacaatgtcgaaacagtc
gatgatgcacaccacgatgctgtgagagacctggcatggggtcccagcgatacaaagttc
ctctcggcttcggatgatacaacacttaagatttttgacttcaccgctcgtgcctgtgat
accgtcctcactggtcataactgggatgtcaagtcctgcgactggcacccaaccaaaggc
ctcctggtttccggttccaaggaccatcaagtcaaattttgggaccctcgcactggtcgg
tgcctgactacgctccacagtcataaaaacactgttactacaaccagattttctagagtc
aatcacaatcttttggctacttcgtcgcgagattctactgctagggtatttgatcttcga
atgatgcgcgacatatgtattctcagagggcacgaaaagccaatatcttcgttaacttgg
cacccagtccatagttcgttgatatcaacaggcagcgaagatggttcgctatatcattac
ttgctggatgagcccaatcagccccccggccaggtccctaccgtggcgccatacgacagc
aacgatccgctcaacaccccaccccaggtggtatatcctgcccatcgcattcaatacgct
cacggctcgacaatctggtctctccactggcatccaatgggacatatattggcctctggc
tcaaaggataatttcgcacgcttctggtctcgagctcgacccggggagactgcatacctg
aaagatcggttccatatcggagaagaggcagctgaagcacaagggacatggaatcggggt
ttcgggaaaaagcaaatgcgagaggaggaagaacaagagcttgaagacgaggcagacggt
ctcgttgaccaaagggctgcggccccgactctccctggtattcaagggctaccgggtatc
tcatcagacgggggtccgatgggactccttccaggcattggcaacccgcaaccgcctcct
cagccgaatatggctccaggcactaaccaactggcttcgatgctaggagtttcctcgctg
cctccggtcgcacatggcaactatgcaccaccacaaccaccaccaaacatgggttttcca
ggcctcggtttcgggccccaagccacggccacaccccctccggtgccgccagctaatctt
aacccgaatctcaatctcgcagcattgcagaagcaattactggcgcaaggagttacactt
cccgcgaatttcgccaacccaagcgcatggaataggggctaa
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