Talaromyces rugulosus: TRUGW13939_06345
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Entry
TRUGW13939_06345 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
trg
Talaromyces rugulosus
Pathway
trg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRUGW13939_06345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trg03019
]
TRUGW13939_06345
Messenger RNA biogenesis [BR:
trg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TRUGW13939_06345
mRNA degradation factors
5'-3' decay
Decapping complex
TRUGW13939_06345
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Erf4
Motif
Other DBs
NCBI-GeneID:
55993840
NCBI-ProteinID:
XP_035345391
UniProt:
A0A7H8R2Z8
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All DBs
Position
III:join(4559887..4560029,4560091..4562313,4562373..4562496)
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AA seq
829 aa
AA seq
DB search
MSFFGFDTSLPRDRQTGQQSRGIFENPDPFAEVARAQAQGLHEGDDDAIDFEDTYDGLGD
QLDDDQDEFNDDTFGGGDTSKDFDFFGKTAQVSDVINEEQVRYTLQHPKAAEPLSSASAQ
HQAPATATAPTVPRLPKKTGYEKYQGSDLIPEIAAKSSVWGTKPQRKSAAETAPAAAMPM
SMPAPSPVPVPASARKMMSLEEVEAQMRYHPQSSLHQSIPIAPNLELPPGIPHGQKISPF
PDGFPPLPPADLMALEQQALAMGIPPAQLLQQIFQHPPPGPPPPPMQPLHRQPPPLPQQQ
RQPNIPQAHRPQQPQQPQQIPVSSQGGAPVITDPQQLMNLSEDERVTYLMEDAKRAKRNH
KIFILSRGNGLMSPQDKNFITRIQLQQLVAATGNVNDDPESLLSEDFYYQVYSQIRGAPR
QHPRQPLGHFAQTYLFQTGNRTGGHGRRQYQNADNHMQRMQQQVQRAVEAAKAKPKNKQL
IIEGSLGKISFSNAKTPKPLLNIKKPEGSEGPKPKRATADLSASDRKSILNNIESVYNIL
MQMEDIERTMPPPPEEGDPESIENHMEWRQKMQSLNQELWQDMKVLEPIVPGSSVPHPFI
AFLSYSKGKKAIPRLFRQIDQEQRVTVLTMIVVNLDSLDVVRKGQLLSGETQLPTAARED
IELFSQTVMPSLLGYVNEAPFNIIIGLLGLVLAQTHVLFVAKSRVGLGIMTMLLSRAEIV
KEAGQAEEHDWEQWIEKFNQLFDSLEPGLADIFPGSINTGDDVYVWQFLAAVGIGASPEQ
QQRLVIAVKDRVMETVAQSKTLPADMASQRLSNVNLFMRAIGLDVELLG
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttctttggcttcgatacctccctacctagggatcgccaaacgggccaacagtcc
cgaggcatctttgaaaatccagacccattcgccgaagtcgctcgcgcgcaggcgcagggc
ctgcatgaaggagacgatgatgcaattgacttcgaggatacctacgatggactcggtgac
cagcttgacgacgaccaagatgagttcaacgatgatacctttggtggcggtgataccagc
aaggactttgacttctttggcaagaccgcccaggtctcagatgtcatcaatgaagagcaa
gtccgctacacgcttcagcatcccaaagctgcagagcctctgtcttctgcgtctgctcag
catcaagctccggccacagcgacggcaccaaccgttcctcgactgccgaagaagactggc
tatgaaaagtatcaaggctccgatttaattcctgagattgcagccaagtcgagcgtatgg
ggaaccaagccgcaaaggaaatcggcagccgagacggccccggctgcagccatgcccatg
tctatgcccgctccttcgcctgtgcctgtgcctgcatccgctcggaaaatgatgagtctg
gaagaagttgaggcccaaatgcggtaccacccacagtcctctcttcatcaaagcattccc
attgctccaaacctcgaactaccccccggaataccacatggccagaaaatatcacctttc
cccgatggcttccctcccctgccaccagccgatttgatggccctagaacaacaggccttg
gctatggggatccctccagctcaattattgcagcaaatctttcagcacccacctcccgga
ccacctccgccgcctatgcagccattacacaggcagccaccgcctctgcctcagcaacag
cgccagcctaatattccccaggctcaccggcctcagcaaccgcagcagccccagcagata
cctgtgtcctctcagggcggcgccccagtgattactgatccgcagcagttgatgaacctc
tccgaggatgaacgtgtgacgtacttgatggaagacgcgaaacgtgcgaagcgaaatcac
aagattttcattctctcccgtggcaatggtctaatgtcaccgcaagacaagaacttcatc
actcggatccagctgcagcaacttgtcgccgccactggaaacgtgaatgacgacccagag
tcactcttgtctgaagatttctattatcaagtctacagccaaatacgtggcgcccctcgc
caacatcctcgccaaccgctaggccatttcgctcagacatatctcttccaaaccggcaac
cgcacaggtggccatggtcgaagacagtaccagaatgcggataaccacatgcagcgcatg
cagcagcaggtgcaacgcgctgttgaggcggccaaggcaaagccgaagaacaagcaactc
atcatcgaaggaagcctcggaaagatttccttcagcaacgccaagacaccgaaaccgtta
ctgaatataaagaagcccgagggctcagaaggccccaagcctaaacgagcaacggccgat
cttagcgctagcgatagaaaatcaatcttgaacaacattgaaagtgtctataacatcttg
atgcagatggaggatattgagcggacgatgcctccgccgccggaggaaggcgaccccgag
tcgattgaaaatcacatggagtggaggcagaagatgcaaagtctaaaccaggagctctgg
caagacatgaaggttctggagcctattgtgccgggatcttcggtgccacacccgtttata
gctttcttgtcatactccaagggcaagaaggccattcctcgtcttttccgccagattgat
caagaacaacgggtcaccgtcctgaccatgatagttgttaacctggactccctggatgta
gtccgcaaaggccaattactctctggagaaacacaactcccaacggcagctcgcgaagac
attgagctattttcccaaactgtcatgccgagcttgcttggctatgttaacgaagcccca
ttcaacatcattatcggccttttaggtctggtactcgcgcaaactcacgttctcttcgtg
gctaaaagcagagtcggtctgggtatcatgacaatgctgctcagtcgagcagaaatcgtc
aaagaggcgggccaggccgaagagcatgactgggaacaatggatagaaaagttcaaccag
ctattcgattctttggaacctggactggccgacatcttccccggttctatcaacactgga
gacgacgtgtatgtttggcagtttttggcagcagttggcattggcgccagcccagagcaa
cagcaacggctggtgatagctgtaaaggaccgtgttatggaaactgtggcccagagcaag
actcttccggctgacatggcaagtcaacgactaagcaatgtcaaccttttcatgcgggct
atcggtctcgacgttgaacttcttggttga
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