Talaromyces rugulosus: TRUGW13939_06531
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Entry
TRUGW13939_06531 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
trg
Talaromyces rugulosus
Pathway
trg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRUGW13939_06531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
trg03000
]
TRUGW13939_06531
03019 Messenger RNA biogenesis [BR:
trg03019
]
TRUGW13939_06531
04121 Ubiquitin system [BR:
trg04121
]
TRUGW13939_06531
Enzymes [BR:
trg01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
TRUGW13939_06531
Transcription factors [BR:
trg03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
TRUGW13939_06531
Messenger RNA biogenesis [BR:
trg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TRUGW13939_06531
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
TRUGW13939_06531
Ubiquitin system [BR:
trg04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
TRUGW13939_06531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
zf-RING_2
RRM_1
zf-C3HC4_3
Baculo_IE-1
NS3
Motif
Other DBs
NCBI-GeneID:
55994026
NCBI-ProteinID:
XP_035345575
UniProt:
A0A7H8QZI5
LinkDB
All DBs
Position
III:complement(join(5066660..5068890,5069732..5071485,5071542..5071910,5071978..5072093,5072190..5072256,5072318..5072370))
Genome browser
AA seq
1529 aa
AA seq
DB search
MSNRNQIDSVIDDDDEFCPLCIEEFDLSDKNFRPCPCGYQICQFCYNNIKTHNEEGRCPN
CRRPYDDSTIQYKVPDADEFKADLALKHRKAAAAKKKEVEKREIEASSRKNLAGVRVVQK
NLVYVIGLNPTIRDEGQLLQTLRGPDYFGQYGEIDKIVVSKAKPGGNPNQGIGVYVTFAR
KIDAATCIAAVDGSQNGDRLLRAQYGTTKYCSSFLRNEQCNNRNCTFLHETGDDSESYSR
QDLSSMNTAQRHGYPNGAAAATGSRPFNQPIQSQPMRRQGSKDETSKSLPDGPALPSSAS
WANKDAPINRARRVSLTGSRSSPSPKPASVTILAKNEESKKHSVSGQDSRRSTPAPQPTQ
QPSSQIQPRAQEAPTKDVVLDSLLKAVNSPDFRFVFSTEGMSDDEIKYIENGPSFIDPFG
GVKRRAMREKAEQERAKQEVEAQSLLPLTVPDEEARESGSLQLGGEPDDVHPARGAATRG
RDNHGAIQPPSQQDTANNSAIGSPLSLSQQFQNLNMNTRSLTPQQQQQLMLLKSANGQQS
NLMDHAIEQASQNRQGPFQGTMPQGGVGGHSRQSSRFSFANDSAKNASNARILSQQGSLT
PNPLTTPAPQQNMSNQFYSSSVQGPPPGLKTAGTPPISGGGMFAQGYGFTSNTSLGLGGN
VGKQEPSPDLMRELLRGRSGTAGTGGVQSHEAKREFMFPFLQQHNTPPPLTPATGLLSAF
YGSQAGTFTDSGPQKQRKKGKKHRHANTSSGGGGVVDLADPSILQARMHPAGVGTTGQVL
YGSQGQVDDDEFPPLNANTTDKTEFPFRPFLPRDPPDISSRSETPTLPPGLPLPLGHPAA
VLFQDESTPQSPASSVNLPTHPSGLTFSRHGTPLQKSLDALSRRQTPVTKDAPGENSSLD
KMRNFGDISLGSPKARSSKKASAEFKHEKFVTGSPLPSYPDGAKDLKKGKPIKLDLSIPS
AEQFVSSAGKEATGLSATALFPTISTGSRPGTPMTGTSRNSDSSGARQPRVLRVVETPKA
ETPPPPPSQVVQPMPSVAQTRVLSRQPSLSSSGRPTTPADGSDYDPTTSASVSRADSPPP
TRIGSAPVRAMTKNQVKKERRLKAKQAEEALKEEASVATNEDTIQAPILGRKRKTKKAPS
SEQSATTTTGTATKSVPESAAPPVSEKENSKSTVGNQNAGQKEKDTVKGEKPTPPAPVAE
MEPQDEPWRTENTVSQLIKDIETGGGSVKDLFLERSSPLYLVLAQLHKAGQIDLNTHPLF
NPTPINQRTDMKCTADDYDLLQDPTELTEEARKILEKGLPLRINNGSEALKDRCVITPKG
RVLRHLTPEEEERYLSLERIADSETSHEYPALSIAEPDYTNMNGGLAALFATPEKFNVRW
VSESQVPLVTTNTEPEDSDLEDHESENCPPNALSAMEADATRLHNTNDSNGAIGSSAHHA
LEFDARSPAVETEKQLLEVRGVAFGEIRDIDNIPALDTAELASYIQQSQRDLEISRKEFD
VIDKKFNALVKRNKKIVQQALGTVLEIGK
NT seq
4590 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatcgcaaccagattgactcagtcatcgatgatgatgacgagttttgccccttg
tgtattgaagagttcgatctttcggacaagaacttcagaccctgtccttgtggataccag
atctgccagttttgctacaataacatcaagacccacaacgaagagggtcggtgcccgaac
tgcagacgaccgtatgatgatagcactatccagtacaaggtgcctgatgcagatgagttc
aaagccgacttggccctcaagcaccgcaaggcagctgccgcaaagaagaaggaggtcgaa
aaacgcgaaatcgaagcttctagtcggaagaacctggctggagtccgagttgtccagaag
aacctggtctacgtgatcggactgaatcctacaatccgagacgaaggccaacttctgcag
acgctgcggggtccagactactttgggcagtacggtgaaattgacaagattgttgtgagc
aaggcaaagccgggcggcaacccaaaccagggcatcggcgtttatgttacatttgctcgc
aaaatcgatgcggcaacctgtatcgctgctgttgatggctctcaaaatggggacaggctt
ctcagggcacaatacggcacaacaaaatactgttcgtcctttcttcgcaacgagcaatgc
aacaatcgcaactgtacatttcttcatgaaactggtgatgatagcgagagctacagcaga
caggatctctcgtcaatgaacacggctcagagacatggttatccaaatggagctgctgcg
gccactggaagccggcctttcaatcagcccatccaatctcagccgatgcgcagacaggga
agcaaggacgagacctcgaaatcattaccggatggtcctgctcttccatcttcggcgagc
tgggcaaacaaggacgccccgattaaccgtgccaggagagtcagtttgactggtagtcgt
tcctccccaagtcccaagccggctagtgtcaccatacttgcgaagaacgaagagtcaaag
aagcactctgtttctggccaagactctcgacgttctactcctgccccacaaccaacccag
caacccagctcccaaatccagcctcgagcacaagaagcacctacaaaggacgttgtactt
gattctcttctcaaagccgtgaactctcccgatttccgtttcgtgttttccaccgagggc
atgtccgatgatgagattaaatacattgaaaatggaccatcgtttatcgacccctttggt
ggagtcaaacgcagagcgatgcgggaaaaggcagaacaagagcgtgcaaaacaagaggtt
gaagctcaatctctgttgccattaacagttccggatgaggaagctcgagagagcggaagc
ttgcaacttggaggcgagccagatgatgtgcaccccgcaagaggcgctgcgactcgtggc
cgcgacaaccatggagctattcagccgccatctcagcaggacacggctaataactcggct
attgggtctccattgtccctgagtcaacagtttcagaacctgaatatgaacacaaggagc
ctaaccccacagcagcagcagcagctaatgttgctcaaatcggccaatggccagcaatct
aatttgatggaccatgccattgagcaagcgtcccagaatcgccaaggccctttccaaggc
acaatgccgcaaggcggggtgggtggacacagtcgtcagtcttctcgcttttcgtttgct
aacgactctgcgaagaacgcatcaaatgctagaattctcagccaacaaggatctttaacc
cccaacccgcttactacacctgctccacaacagaacatgtcgaaccagttctactcgagc
agtgtacagggcccgcctcctgggctgaagacggctgggaccccgcctattagtggtggt
gggatgttcgcccaaggctacggcttcacctcaaacacaagtcttggtctgggtggaaat
gttgggaagcaagagccaagccctgatttgatgcgagagttactgcgaggccgcagtgga
actgctggtacgggtggcgtgcagagtcacgaggctaagcgtgagtttatgtttcccttc
cttcaacagcacaataccccccctcccctgactcccgctactggccttctcagtgccttc
tatggttcccaagccggtacttttaccgactctgggccacagaagcagaggaagaagggg
aagaagcacagacacgctaacacttcctccggtggaggcggtgtagtagatcttgcggac
ccgagcatactgcaggcgagaatgcacccagctggtgttggtacgactgggcaagtgcta
tacggaagtcaggggcaagttgacgacgatgaatttccacctctgaatgccaatacgaca
gataagacagaattcccatttcgaccctttttgcctagagatccaccagatatctctagc
cgttctgagacacctacattgcctcctggacttccacttcctcttggtcatccagcggca
gtgctttttcaagatgaatcgaccccccaaagtccagcctcatctgtgaacttgccaacg
catccttcaggtctgacattttcacgccatggtactcctctccagaaatcattggatgcc
ctatccaggcgtcaaacaccagtgacgaaagacgcacctggtgagaattcatcactggac
aaaatgcggaattttggcgatatttctttaggatcccctaaagcaaggtcgtccaagaag
gctagtgctgaatttaagcacgaaaaatttgtaacgggcagtccgctgccgtcttaccct
gatggagcaaaagacctgaagaaagggaagcccatcaagttggacttgtccatcccatct
gcagagcaatttgtgtcatctgctggtaaagaagctactggtctatcggcgacagctctg
tttccaactatttcaactggctcgagacctggaactcctatgacagggacatcgaggaac
tctgattcttctggagcgcgtcagcctcgagtacttcgagtggtggaaacaccgaaggca
gagacaccaccaccaccaccgtctcaagtggttcagccaatgccttctgtggcccagaca
cgagttctctctcgacaacccagcctgtcttcatcaggtcggcccactacgccagccgat
ggatctgattacgatccaacaacttctgcgtcagtttctagagcagactcgcctcctcct
accagaatagggtcagcgcctgtccgtgctatgacaaagaatcaagtaaagaaagagcgc
agattaaaagccaaacaagcagaagaggctttgaaagaagaggcgtctgtcgcgacaaat
gaagacaccatacaggcaccaattctaggacgcaagcgcaagactaagaaagcgccttct
tcagagcagtccgcaacgacgacaacgggaactgcgacaaagagcgttcctgagagcgcc
gcaccccctgtcagcgagaaagaaaattcgaagtcaactgtgggtaaccagaacgccggt
cagaaagaaaaagatactgttaaaggggagaagcccacaccacctgcacccgttgctgag
atggaacctcaggatgaaccgtggcggactgaaaataccgtttcgcaattgatcaaagac
atagaaaccggtggcggctcggtcaaggatctatttcttgaaagaagttcgcctctttac
ctcgtacttgcgcaactccacaaagctggtcagattgatctcaacacccacccactcttc
aatccaacacctatcaatcagcggacggatatgaagtgcacagcggatgattacgatctt
ctacaggatccaactgaactcacagaggaagctcggaagatactcgaaaaaggcttacct
ttacggattaacaatggctctgaagcattgaaggaccgttgtgtgatcacacccaagggc
cgagtgctacgacacctgactcctgaagaagaagagcgctatttgagtttagaacgtatc
gcagactcagagacttctcatgagtatcctgctctttcaattgcggagccagattacaca
aacatgaacggtggtttggctgctctcttcgcgactccagaaaagttcaatgttcgctgg
gtgtcggagtcccaggtaccactggttactaccaatacagaaccagaggatagcgatttg
gaggaccatgagtctgaaaattgcccacctaatgctctgtcggccatggaagctgacgca
acgagactacacaacacaaatgactctaatggcgctattggctcgtcagctcatcatgct
cttgaatttgatgctagatcccctgcagtagaaactgaaaagcagcttctggaagtaaga
ggcgtggcatttggcgagatacgggacattgacaacattcctgcgttggataccgcggaa
cttgcctcgtatatccagcagtcgcagagagatctggagatttctcgcaaggagtttgac
gttatcgacaaaaagttcaacgcgcttgtgaagcgcaacaagaaaattgtacagcaagcc
cttggtaccgtgcttgaaattgggaaatag
DBGET
integrated database retrieval system
