Talaromyces rugulosus: TRUGW13939_06906
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Entry
TRUGW13939_06906 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K14327
regulator of nonsense transcripts 2
Organism
trg
Talaromyces rugulosus
Pathway
trg03013
Nucleocytoplasmic transport
trg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
TRUGW13939_06906
03015 mRNA surveillance pathway
TRUGW13939_06906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trg03019
]
TRUGW13939_06906
Messenger RNA biogenesis [BR:
trg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
TRUGW13939_06906
mRNA cycle factors
P-body specific factors
TRUGW13939_06906
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
55994399
NCBI-ProteinID:
XP_035345941
UniProt:
A0A7H8R046
LinkDB
All DBs
Position
IV:join(355019..355037,355100..355144,355214..357300,357355..357646,357704..357861,357910..358500,358557..358873,358925..358931)
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AA seq
1171 aa
AA seq
DB search
MDQQRKRELRGLNDRAWAGEEGFFAVKSPLDSSLKKNTAFIKRLRTGITASAPSTFITDI
RTLSLHKYLSEIISACYEGLSKLKSPGEVAAGVEIVSALHQRFGPNEFTKQIGWLLGRGL
SSPDKSQLKALSQEVREREEKERLSRHRVLLRVVTELWLVGFLKTLDDIERPDDIGAKGK
DGGSAAAGKTADGPSKTRAAGKGDQDKEADPFPLEVLKDLLGYDREHVNLPLAVLFVKTF
SWDILGVRSIEEGRKTVDADGATATAEDNEAAAEETAAKPDSSIGSPLISEKLQLRFKNI
LTRYLEDVKAHVARDQKALAAQNRRNAEAYVKSGEIFEDRQANFEKQSKTHEKMISNTQI
MCEALGVEMPALADKEAADASASGGIGLVKTAEYLRGQGDGAGIWEDEEERRFYENLADL
KGKVPAVLLEDGKKKKGEADEQGKGQNTTEKAELPVPETKPSVEADNESMAVVNKTVGAQ
VDALLVKLPDLQNKDQVDQLALDFCFLNSKASRNRLIKAMQDIPKGRTDLLPLYSRLVAT
LGQHMPDVPQGLITYLDEEFRSLQRRKQKEFLGQVRMVNIRYLAELTKFGVVPEHVIFHC
LKVCLDDFSRTNIEIMGNLLENCGRYLLRNPESSPRMASFLETLGRKKTATHLGQQERMI
IENAMYYVDPPERPAIRQKERTPMELYIRKLIYLDMNKRNYTKVLKAIRKLHWEEQEVVS
ILERVFSRPSKVKYGNVHLLAILASALYRYHQEFIIGIVDNVLESITLGLEQNDFKFNQK
RVAEVKYLGELYNYKMIDSPVVFDALYRIVVFGHENGTPTPGKINILDMPDDFFRIRLVC
TVLDTCGVCFDRGSAKKKLDFFLTFFQFYILTKDPIPMDVDFLIQDTYALVRPQWKIATD
LEEAGQLFSEAIAQNYKAQDGDRPAEADEDEIESVSSDGNGDEGLEEDGMPDAEDMQSSA
DEADHSPNHEERDFESEEEQIFVSRQEEERDPEVEAEFDRAFEKMMTESIEGRRFERKAM
FDVPLPMRPSRREAGGGDEIPVEEPKPSNTMAFSLMTKKGNRQQTRTIELPSDSSFAVAM
KSQQQADREEQQRIKNLVLSYDPGDAEQTDGEDALSSVTQEPFSIQRNPNTKAKAKNSKG
FEKRTTQTRMEKPSRAQFRARRLQLSDVDWT
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggatcaacagaggaaacgggagctccgcggattaaatgatcgggcgtgggctggtgaa
gagggctttttcgccgtcaaaagtcccctcgattcatcgttgaagaagaacaccgcattt
atcaagcgtctccgcaccggcataacggcttctgcgccctccacgtttatcaccgacatc
cgtaccctgtcacttcacaaatacctttccgaaattatttcggcgtgctatgagggtctg
tccaagctgaagtctcccggggaagtggctgctggggtggagattgtgagcgccttgcac
cagagattcgggccaaacgaattcacaaagcaaattgggtggttgttgggtcgtgggttg
agttcgccggataagtcgcagctcaaggctctcagccaggaagttcgtgagcgtgaggaa
aaggaacgattgtcgcgacaccgcgtccttcttagggtggtgaccgagctatggctggtg
ggatttctaaaaactctggatgacatagaacgaccggacgatatcggcgccaaggggaaa
gatggcggttcagctgccgcagggaaaaccgctgacgggccgtcgaagacaagggcagca
ggcaaaggggatcaagacaaggaggccgatccgtttcctttggaggtattgaaagatctc
ttaggttacgatagggagcacgtcaatctcccacttgccgttctttttgtcaagaccttt
agctgggatatcctaggtgtcaggtcgattgaggaaggtcgcaaaaccgttgatgcagac
ggtgctaccgctacggccgaggataacgaagcagcggccgaggaaacagctgcgaaacca
gactcatccatcgggtccccgttgatatcggagaaattgcagttgcgctttaagaatatc
cttacacggtacttggaggatgtaaaagctcatgtggctcgcgatcaaaaggctttagcc
gcgcagaaccggcgaaatgcagaagcttatgtcaagagcggagagattttcgaggatcgg
caagcaaactttgaaaagcagtctaagactcatgaaaagatgatttctaatactcaaata
atgtgtgaggctcttggggtggaaatgccagccttggccgacaaggaggctgccgatgct
tcagccagcggaggaattggccttgttaagaccgccgagtatcttcgtggacaaggtgat
ggagcaggtatctgggaagatgaagaggagcgtcggttttatgaaaaccttgccgacctc
aagggaaaggtgccagccgtgcttttggaagatggcaagaaaaagaagggagaggccgat
gagcaaggtaaaggacaaaatactacggagaaggcggagttacctgtaccggaaacgaaa
ccatctgttgaagcggataacgagtccatggcagtcgtgaacaagaccgtcggcgcacaa
gttgatgcccttcttgtcaaacttcctgaccttcaaaacaaggaccaggtggatcaactt
gcactggatttttgctttttgaactcaaaggcttctaggaaccgcttgatcaaggccatg
caagatataccaaagggccggaccgatcttctgcccctatattcacgcttggttgctact
ctcggacagcacatgcccgacgtcccgcaaggactgattacgtacttggacgaagagttc
agaagtcttcagcgtcgcaaacaaaaggagtttctggggcaagtccgtatggtcaatata
cgatacctggcggaattgaccaaatttggcgttgttcctgagcatgtcatctttcactgt
ctcaaggtttgcctggatgacttttctcgcaccaacatcgaaatcatgggcaatctcctt
gagaattgtggccgctatctgttgcgtaaccctgaatcatctccccggatggcatcattc
ctcgaaaccctgggccgcaagaagactgccacccatctcggtcagcaagaacgtatgatc
attgaaaacgccatgtactacgtggaccctcccgagcggcctgctatccgacagaaggag
cgtacgccaatggagttatatatccggaagctgatttacctggatatgaacaagcgcaac
tacaccaaggttttgaaggccattcggaaactccactgggaagagcaagaggttgttagt
atactcgaacgtgtctttagcagaccgagcaaggtgaagtatggcaacgtccacttgttg
gcaatacttgcgagcgcgttgtaccgttatcatcaagaattcatcattgggatagtggac
aacgtgctggagtcgattacgttgggactggagcagaacgacttcaagttcaaccagaaa
cgtgtcgcagaagtgaaatatcttggggaattgtacaattacaagatgattgattctcca
gtggtttttgacgctctttatcggattgttgtcttcggacatgaaaatggaacaccgacg
cccggaaagatcaatatactcgacatgccagatgacttcttccgtatccgtcttgtttgc
accgtgctcgatacctgcggagtttgctttgaccgcgggtccgcaaagaagaagttggat
tttttcctcacctttttccagttctacatactgaccaaggacccaataccgatggatgtc
gactttcttatccaggacacatatgccttggttcgtccccaatggaagattgccactgat
cttgaggaagctggtcaattgttcagcgaagcgattgcgcaaaactacaaggcccaggat
ggcgatagacctgcagaggcggatgaagacgagatagagagcgtttcttctgatggcaat
ggtgatgaaggcctcgaggaggacggcatgcccgatgccgaagacatgcagtcttcagca
gatgaagccgatcattctcctaatcacgaggagcgcgattttgaatccgaggaagaacaa
atttttgtatctcgtcaggaagaagagcgggacccggaagtggaggcagaattcgaccgt
gcattcgagaagatgatgaccgagagcattgaaggccgcaggtttgagcgaaaggccatg
ttcgatgtaccgctccctatgcggccgtctcgtcgcgaggccgggggaggtgacgaaatt
ccggtcgaggagcccaagccttcgaataccatggcattttccttgatgaccaagaagggc
aatcggcagcagacacgtactattgagttgccgtccgattctagctttgcagtggcgatg
aaaagtcaacaacaagcggaccgtgaagaacaacaacgcatcaagaaccttgtcctcagc
tatgacccaggagatgctgaacaaaccgatggtgaagacgccctttcttctgttacccag
gaacccttttctattcagaggaacccaaatacaaaggccaaagctaagaattctaaaggt
ttcgagaaacggacgacgcagaccaggatggaaaaaccgagtcgagcccaattccgcgca
cggcgacttcagcttagcgatgttgactggacttga
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