Talaromyces rugulosus: TRUGW13939_07110
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Entry
TRUGW13939_07110 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
trg
Talaromyces rugulosus
Pathway
trg03013
Nucleocytoplasmic transport
trg03015
mRNA surveillance pathway
trg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TRUGW13939_07110
09122 Translation
03013 Nucleocytoplasmic transport
TRUGW13939_07110
03015 mRNA surveillance pathway
TRUGW13939_07110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trg03019
]
TRUGW13939_07110
03041 Spliceosome [BR:
trg03041
]
TRUGW13939_07110
Enzymes [BR:
trg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TRUGW13939_07110
Messenger RNA biogenesis [BR:
trg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
TRUGW13939_07110
Spliceosome [BR:
trg03041
]
Complex C
Other components
EJC/TREX
TRUGW13939_07110
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
TRUGW13939_07110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
55994603
NCBI-ProteinID:
XP_035346145
UniProt:
A0A7H8R1V4
LinkDB
All DBs
Position
IV:join(982621..982882,983508..983918,983982..984342,984398..984655,984706..984751)
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AA seq
445 aa
AA seq
DB search
MATEEDLIDYSDEELQTTEAANAAAPAAADAANGGAATKKGDLTVSGGRPDKKGSYVGIH
STGFRDFLLKTELLRAITDCGFEHPSEVQQICIPQGLLHSDLLCQAKSGLGKTAVFVLTT
LHSLDPVEGEVQALVMCHTRELAYQIKNEYARFSKYLPQVKTAVFYGGTPMQKDIDLLSN
KETRPNIVVGTPGRLNALVREKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRNTPSE
KQVMMFSATLSQEVRPICKKFMRNPLEVYVDEGTKLTLHGLQQYYIKLSEQEKNRKLSDL
LDNLEFNQVIIFVKSTTRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRIC
VATDVFGRGIDVERINLAINYDLPGDADSYLHRVGRAGRFGTKGLSISFVSNEDDENVLK
EIEKRFEVALPEYPAEGVDASTYMA
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgaagaggatctcatcgactactccgacgaggagctgcagaccaccgaagcc
gcaaatgctgctgcgcctgctgctgccgacgcggccaatggtggtgctgccaccaagaag
ggcgacctgactgtgagcggcggccgtcccgacaagaagggcagttatgtcggtattcac
tcgaccggtttccgcgatttcttgctcaagaccgagcttctacgtgctattaccgattgc
ggattcgagcatccatcggaggttcaacaaatctgcattccccagggtttgcttcacagc
gatcttctctgccaagccaagtctggtttgggtaagacggcagtgtttgtcttgacgaca
ctccactctctcgacccggttgagggcgaggttcaggctttggtcatgtgccacactcgt
gagttggcttatcagatcaagaacgagtatgctcgtttcagcaaataccttccgcaagtt
aagacggccgtgttctacggaggcacaccgatgcaaaaggatatcgaccttctcagcaac
aaggagacgcgccctaacattgttgtcggaacgcctggacgcctcaacgcccttgtgcgt
gagaagaagctgtcgctgcgcaacgtcaaggcgtttgtcctcgacgaatgtgacaagatg
ctcgatcaaattgacatgcgtcgtgatgtgcaggagatcttccgcaacactccgtcggag
aagcaggtcatgatgtttagcgccactctttcccaagaagtgcgaccgatctgcaagaag
ttcatgcgcaacccgcttgaagtgtacgttgatgagggtaccaagctcactctgcacggt
ctgcagcagtactacatcaagctcagcgagcaggagaagaacaggaagctgagtgatctg
ctcgataacctggagttcaaccaagtcatcatcttcgtcaagagcacgactcgtgccaat
gagcttgacaagctgttgcgtgaatgcaacttccccagtattgctgtacactctggtgtc
agccaggaggaacgtatcaaacgctacaaggagttcaaagagttcaacaagcgaatctgt
gtggccaccgacgtgtttggacgtggtatcgatgttgagcggatcaacctggcgatcaac
tacgacttgcccggcgacgccgactcgtacctgcaccgtgttggccgtgctggccgattc
ggtaccaagggtctttcgatctcgtttgtcagcaacgaggacgacgagaacgtgctcaag
gagattgagaagcgcttcgaagtcgctcttccggaataccctgccgaaggtgtcgatgcc
agcacttacatggcttaa
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