Talaromyces rugulosus: TRUGW13939_08865
Help
Entry
TRUGW13939_08865 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
trg
Talaromyces rugulosus
Pathway
trg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TRUGW13939_08865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trg03021
]
TRUGW13939_08865
03019 Messenger RNA biogenesis [BR:
trg03019
]
TRUGW13939_08865
Transcription machinery [BR:
trg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
TRUGW13939_08865
Messenger RNA biogenesis [BR:
trg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
TRUGW13939_08865
U7-dependent histone pre-mRNA processing factors
TRUGW13939_08865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
55996350
NCBI-ProteinID:
XP_035347884
UniProt:
A0A7H8R5S3
LinkDB
All DBs
Position
V:complement(join(956456..956994,957054..957690,957742..958879,959205..959302,959369..959521))
Genome browser
AA seq
854 aa
AA seq
DB search
MASKRKASAMAATVDDEPVDPSDELAFYCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAK
EGFAALPFFDEFDLSTVDILLLSHFHVDHSSALPYVLSKTNFKGRVLTTHATKAIYKWLI
QDNVRVSNTASSSDQRTTLYTEHDHLSTLPLIETVDFYTTHTINSIRITPYPAGHVLGAA
MFLVSIAGLNILFTGDYSREEDRHLIPAEVPRGVKIDVLITESTFGISSNPPRLEREAAL
MKSITGVLNRGGRVLMPVFALGRAQELLLILDEYWERHPEYQKAPIYYIGNMARRCMVVY
QTYIGAMNDNIKRLFRQRMAEAEASGSKNVSAGPWDFKFVRSLRSLERFDDVGGCVILAS
PGMLQTGTSRELLERWAPSERNGVVMTGYSVEGTMAKQLLNEPEQIPATMSKGSGGPGSR
ANPDEDQKVMIPRRCTIDEVSFAAHVDGVENRNFIEEVGAPVVILVHGEKHQMMRLKSKL
LSLNAEKTVKVKVYTPANCDEIRIPFKKDKIAKVVGKLAEETQPTDLDESELMAGVLVQN
GFDLSLMAPADLREYAGLTTTTITCRQHLTLNSATMDLIKWALESSFGAIEQFGSSAKES
KKENGTNGKLLEEADEEIEYAENEAYLVMGSVVVRYMARTREVELEWEGNMMNDGVADAV
MAVLLTVESSPASVKQSCKHHHHDHSHDDSQVESTHRNFNPHERFAQLLMILEAQFGETV
TPIERPRVSTQAAANDSATEPAATEAEEEPLSEDERVKAEAAELARLHALGIPFPGVEIK
VDTHVARVYLEDLEVECGNAVLRDRIRVVLERAVETVASMWTQEISSRSGHTHANGIAYD
QDKLLEKKLAMIEA
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaagcgcaaagcgtcagccatggcggcgaccgtggatgacgagcctgttgac
ccgtcagacgagttggccttctattgcttaggaggcggcaatgaggtcgggcgctcatgt
cacatcattcaatataagggaaagaccgtcatgctggacgctggtatgcaccccgcgaaa
gaggggttcgcagctctgccctttttcgatgagttcgatttgagtacggtggatatactc
cttctcagccatttccacgtcgatcactcatctgctctcccatacgtgctcagcaagacc
aatttcaaaggtcgagttttgacgacacacgctacgaaagccatctataaatggctgatc
caagataatgtccgagttagcaacaccgcatcttcatctgaccagcggacaactctctac
accgaacacgaccacctttctacccttcctcttattgaaacagtcgacttttataccacc
catactatcaacagcatccgaatcactccgtatcctgctgggcacgttctgggggcggcc
atgttccttgtttccatcgcagggctgaatatcctctttacgggcgactattctagagag
gaggatcggcatttgatccctgccgaggtaccaagaggcgtcaagattgatgtcctcatc
accgaatccacatttggtatttcgtcgaaccctcctcggttagaacgagaagccgctctc
atgaagtccatcacgggagttcttaatcgcggcggtcgcgttttgatgccagttttcgcc
ttgggccgagctcaggaactccttttaattctggatgaatactgggagcgacatcccgaa
taccaaaaggcacccatatactacattggtaacatggctcgccgttgcatggttgtctac
cagacctatatcggagccatgaatgacaatatcaagcggcttttccgccaacgaatggcc
gaagccgaggctagcggtagcaagaacgtcagtgcaggcccttgggactttaagtttgtg
cgaagcttgagaagcctggaacgattcgacgatgtgggcggttgtgtgatactcgcttcg
cccggtatgcttcaaactggcaccagtcgagagcttttggaacgatgggcaccaagcgaa
cggaacggcgtggttatgacgggatacagcgtggagggaacaatggccaagcaattgctc
aacgagccagagcaaatcccagctacaatgtccaagggctcaggcggtcccggcagccgt
gcaaatcccgacgaagaccaaaaggttatgattcctcggcgctgcactatcgatgaagtc
agttttgctgcccatgtggatggtgtggagaatcggaacttcatcgaggaagtcggggca
cctgttgtgattctcgtccacggggagaagcatcagatgatgcgcttaaagtcgaaactg
ctcagtttgaacgccgaaaagacagtcaaggtaaaggtctacacgccggccaactgcgat
gagattcgtatccctttcaagaaagacaagatcgccaaggttgttggcaagcttgccgaa
gaaactcagccaacagacttggatgagagtgagctcatggctggcgtgctcgtccaaaac
ggctttgatctgtctttgatggcaccggctgacttacgagaatatgccggcctcacgacg
acgacaatcacttgcagacagcacttgaccttgaactctgccaccatggacttgatcaaa
tgggctctcgaaagctcgtttggcgctatcgaacagtttggttctagcgcgaaggaatct
aagaaagagaacgggacaaatggcaagttattagaagaagcagacgaagagatcgaatat
gccgaaaatgaagcatacttggttatgggcagcgtggtcgttagatacatggctcgtacg
cgcgaagttgaactggaatgggagggcaacatgatgaatgacggggttgccgatgcagtc
atggcagtgctcttgaccgtggagagcagccctgcatcagtgaaacaatcgtgcaaacat
caccaccatgatcactcccacgatgacagccaggttgaatcgacgcataggaatttcaac
ccccacgaacggttcgcccagcttcttatgatccttgaagcccaattcggcgagaccgtc
acccctattgaacgcccacgagtaagcacccaagctgctgcaaatgactctgccacagag
ccagccgctacagaagcagaagaagagccgctatccgaagacgaacgcgtcaaagccgag
gccgccgagcttgcacgtttacacgcactcggcattcccttccccggcgtcgaaatcaaa
gtcgacacccatgttgcgcgcgtatacctagaagacctcgaggtcgaatgcggcaatgca
gtactgcgggatcgcatccgcgtcgtgctagagcgcgccgtggagactgttgcgagcatg
tggactcaagagatcagtagtaggagtggccacacacatgcgaacgggattgcatacgac
caagataagctgctggaaaagaaattggctatgattgaggcgtaa
DBGET
integrated database retrieval system
