KEGG   Talaromyces rugulosus: TRUGW13939_09033
Entry
TRUGW13939_09033  CDS       T06879                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
trg  Talaromyces rugulosus
Pathway
trg03020  RNA polymerase
trg03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:trg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TRUGW13939_09033
  09124 Replication and repair
   03420 Nucleotide excision repair
    TRUGW13939_09033
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:trg03021]
    TRUGW13939_09033
   03400 DNA repair and recombination proteins [BR:trg03400]
    TRUGW13939_09033
Enzymes [BR:trg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TRUGW13939_09033
Transcription machinery [BR:trg03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     TRUGW13939_09033
DNA repair and recombination proteins [BR:trg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      TRUGW13939_09033
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Sel1 RNA_pol_Rpb1_R SMBP
Other DBs
NCBI-GeneID: 55996517
NCBI-ProteinID: XP_035348051
UniProt: A0A7H8R6N6
LinkDB
Position
V:join(1390508..1390636,1390710..1390866,1390919..1390989,1391053..1395923,1396826..1396869,1396956..1397084,1397160..1399109,1399164..1399591,1399867..1400571)
AA seq 2827 aa
MANVYFPYSKAPLRTIKEIQFGLLSPEEIKRLSVVHVEYPETMDEQRTRPRTKGPNDPRL
GTLDRQFVCETCEEGQKECPGHYGHIELAVPVFHIGFITKTKKLLETVCHNCGKIKADIS
DSKFQDALRVRDPKRRFDMIWRLSKDVAVCEADPPVEDDDPFSKESSKPAKAHGGCGNAQ
PTIRREGLSLMGTWKPNKANMMEDDVEMPQPEKRTITPSMAHNIFRSISHEDVRIMGLSN
DYARPEWMVLTVLIVPPPVVRPSVVSGKSTSGQRAEDDLTFKLAEIIRANQNLQRCEQEG
APEHVVREFEALLQYHVATYMDNDIAGQPKAMTKSNRPVKAIRGRLKGKEGRLRQNLMGK
RVDFSARTVITGDPNLSLDEVGVPRTTAMVLTYPEVVTPYNIEFLQKLVNNGPTIYPGAR
YIIRDNGERIDLRMARKTNANLLYGWKVERHIMDGDVILFNRQPSLHKESMMGHHVRVLP
YSTFRLNLSVTSPYNADFDGDEMNLHVPQSEESRAELHELAMVPFQIVSPQRNGPLMGIV
QDSLCGVYKMCRRDVFLSKDQVMNVMLWVPDWDGAIPPPAILKPRPRWTGKQIISMVLPS
GLNLLRVDKDGAPLSEKFSPLADGGLLVHGGQLMYGMFSKKTVGASGGGIVHTIFNEYGP
EAAVSFFNGAQRVVNYWLLHNGFSIGIGDTIPDQDTIERIEGAVRAGKEEVEQIVASATE
NTLEPLPGMNIRETFESKVSRALNNAREESGSETEKSLKDLNNAIQMARSGSKGSSINIS
QMTAIVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPSEFFFHAMA
GREGLIDTAVKTAETGYIQRKLVKALEELMVKYDGTVRNSLGDIIQFLYGEDGLDGAHIE
NQRVDIIKCSDNQLRDRFRIDLMNPEQTLGPEVLEQATEIAGDVEVQRYLDEEWEAILKD
REFLRSVAKGDEEMMQLPINVQRILESAKTTFRIKEGTISDLHPAEVIPQVQALLDRLVV
VRGDDLISQEAQTSATLLFKAQLRSRLAFKRLVTQYSMNKLAFKHVLGAIEMRFSRAQAP
PGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVY
QEPHKKHNKESAKQLRSAVEHTSLRSVTQATEIYYDPDIQSTVIDNDRDMVESYFIIPED
VTDDAAHQSKWLLRIVLSRPKLLDKGLTVQDVASRIKEQYPKDIAVIFSDNNADEQVIRI
RQLHDVKEDEDDEDMEYDVTLKKLEQHLLDTLTLRGVAGVERAFINEKDNVRLMDDGALF
QSKSDPLCKEWVLETSGSALADVLTIPGVDRSRTYSNQFIEVFEVFGIEAARSALLRELT
QVLAFDGSYVNHRHLALLVDMMTVRGYLTPVTRHGINRADNGALMRCSFEETVEILLDAA
AFGELDDCRGVSENLILGQMAPAGTGEFDVYVDQDMLNTVVSSNANLGLTGALGAKDAII
NDGAATQYDNNSPMMENGYIGTPDPDARFSPIRQGGSETPGGLTPYQPSGGLGGFSPAPQ
SPGGYSPTSPFNTSPVSPGYSPSSSYSPASPGMAITSPRYMTSPGFSPQSPNFQPTSPAY
SPTSPAYGQASPTSPSYSPTSPRFSPSSPNYSPSSPNFSPASPAFSPSSPTYSPTSPAIG
GSRQFSPSSPTSPKYSPASPGWSPTSPEIYSPTSPNIHGSPTSPMRGATSPSYSPTSPQY
NPTKMRSWSRFFLPLVLLSLLLGALVECRSHSTSVSTSNGPSENFGKGTEDNTFAGNDGR
DLVESALQKLRELKISPAASSKPSGLVGYGLHYAKHAFYLLFMNGPPLEDQSDSDSQSYR
LDPDLAKAVNELEVAATETQNPDAMFLLAEMNFYGNYSHPRNFKEAFKWYHDLALSTGNS
SAQYMIGFMYATGIGGAVERDQGMALLYHKFAAEQGNTRSEMTLAFRHHIGIGTHRNCDS
ATHYYKRVADKAIAYWRSGPPGGYNMPRQSFRWADDEGGVYGEGASVSSSGPNANRDSGQ
PSAEASLEDIIEYLDLLSKKGNLKATLSLGKWHYDGSRNLPRNYRKAMKYFRAVAKRYWT
KDGAIIANHPPEIEAAAAKAAGHIGLMYLRGEGVEQNFATAMAWFKRGLANGDPLCQHEI
GLMYLHGYGVTQDAFKASGYFKAAAEQDFAAAETRLGALFLDQGDVQTATRYFELAARLG
WMEAFYYLAEIANFGIGRERHCGMASAYYKMVAEKAEQVHSSFAEANKAYENDDHDTALI
AVMMAAEQGYEHAQSNVAYLLDEQQSVISLGKILPWAKKRRSSLLRNTALALIYWTRSAR
QSNIDSLVKMGDYYLKGIGSSVDAEKASTCYHTAAEGHHSAQAYWNLGWMHENGVAVDQD
FHMAKRYYDLALETNHEAYFPVKLSLMKLRLRHFWNRITNGKVNGIQDEKENRAPRTFKE
WIIAFLENDEEEALYQAQLLREREENGDILGTHHPHRAENDDTGYYDELELDIDESVFEA
LIIVALAATLLILVYIRQRNRRDGENAGNGQQQAAGGQNGQGANVAANNNNNNDRGLFPR
PDQPEFAQWAAGGFNSPAMGERHANIKRRRLDEATSALARPFKSPLRKDGDVDPSNKNDK
EGGMSDADKSFRVATSEDAMVHKPVLSSAPPRYSITPRQYRAPLKMDPELVALQKEQISL
RSRLATLRSQVDTAQQALRIESSPRDEELQALTEKWKKVSQNVADELFVSAKDRIERMGG
VDAWREKERMRKVQMSWGDDEGRETEVPDDFERTSSAEITSSSSSTPKEDENASILMATP
FHSLIGF
NT seq 8484 nt   +upstreamnt  +downstreamnt
atggcgaacgtttatttcccctactccaaggcgcctttgcgcaccatcaaggagattcag
tttggccttttgtcccctgaggaaataaaacgactgagtgttgtccatgtcgaatatccc
gagactatggatgagcagagaacccgtccacgaaccaaaggaccaaacgaccccagactc
ggcactctcgatcgacagtttgtctgcgagacttgtgaggaaggccagaaggagtgtcct
ggtcattacggccacatagaactcgcagtacctgtcttccatattggtttcattaccaag
accaagaaactgctggagaccgtgtgccataactgtgggaaaatcaaggccgatatatct
gattccaagtttcaagatgccttgcgagtccgtgatcccaagcgccgcttcgacatgatt
tggcgcctgtcaaaggacgtagcagtctgcgaagcagatcccccagtcgaagatgacgat
ccattctccaaagaatcctccaagccggccaaggcacacggcggttgcggaaacgcccag
ccaactattcgtagggaaggcctcagcctgatgggaacctggaagccgaacaaagcgaac
atgatggaagatgatgttgaaatgccccagcctgagaagcggaccatcaccccttcgatg
gctcataacatcttccgcagcatttcgcacgaagacgtacggataatgggtttaagtaat
gactatgctcgtcctgagtggatggttctcactgttctcattgttccacctcctgttgtt
cgtcccagtgtcgtcagcggcaagagtaccagcggtcaacgtgccgaagatgacttgact
ttcaagcttgctgaaattattcgagcgaaccagaatctccagcgatgcgaacaagaaggc
gcgcccgagcacgttgtccgcgagttcgaagctcttcttcaataccatgtcgcaacgtac
atggacaacgacatcgccggccagccaaaagctatgacaaagtccaacaggcctgtcaaa
gccattcgtggacggctcaagggaaaagaaggtcgtctgcgacagaacttgatgggaaag
cgtgtcgacttttcggcccgtactgtcatcactggcgatcctaacttgtcactggatgaa
gtcggagtaccacgtaccacagctatggttcttacttatccagaggtggttaccccgtac
aacatcgaattcctgcaaaagcttgtcaacaacggccctacaatctacccgggagcacga
tacattattcgcgacaatggcgagcgcattgatttgcgtatggcacggaagacaaacgct
aatcttctctacgggtggaaagtagagcgtcacatcatggatggcgatgtgattcttttc
aaccgtcagccttcgctgcacaaggaatccatgatgggtcaccatgtccgggtgttgcct
tattccaccttccgtcttaacttgtcagttacgagtccttacaacgctgactttgatggt
gatgaaatgaacttgcacgtccctcaaagtgaggagtctcgtgctgagcttcatgaactc
gctatggtgccattccagattgtttcaccccagcgaaatggtcctcttatgggtattgtg
caagactccctgtgtggtgtctacaaaatgtgtcgacgtgacgtgttcttgtccaaggac
caagtcatgaacgttatgctctgggttcctgattgggacggtgctattcctccaccggca
attctcaaacccagacctcgctggaccggaaagcaaattattagcatggttcttccctca
ggacttaaccttctccgtgttgacaaagacggtgccccactttctgaaaaattctctcca
ctggcagatggaggattacttgtgcatggcggccagctgatgtacggtatgttttccaag
aaaactgttggtgcttccggaggtggtattgttcatactatcttcaacgagtacggcccg
gaagctgctgtgtctttcttcaatggtgctcaacgagttgtcaattactggcttctgcat
aatggtttttcaattggtatcggtgatactattcccgaccaagacactatcgagcgcatt
gagggtgctgttcgagcaggaaaagaggaggttgagcagatcgttgctagtgctaccgag
aacactttggaacccctgcccggtatgaacatccgagagacttttgaaagtaaagtatcg
cgtgctttgaacaacgctcgtgaagagtctggcagtgagacggagaagagtttgaaggat
ctcaacaacgccattcaaatggctcggtctggttccaagggttcctctatcaacatctcc
cagatgactgccattgtcggtcaacagtctgttgaaggtaaacgtattcccttcgggttt
aagtaccgcactctgccgcatttcaccaaagacgattattctccggagtccagaggtttc
gttgagaactcatacctccgtggcttgacgccaagcgaatttttcttccacgctatggct
ggtagagaaggtcttattgatacagcagtcaagactgcagagaccggttacattcagcgc
aagctcgtcaaagctcttgaagagcttatggtcaaatacgacggaactgtgcgaaactcc
cttggggatattattcaattcttgtacggagaagacggtttggatggtgctcacattgaa
aaccagcgcgtggatatcatcaagtgttctgacaatcaattgcgcgaccgcttccgtatc
gatctcatgaaccccgagcaaacgcttggtcctgaagtcttggaacaggcaactgaaatt
gctggcgatgttgaagtccagagatatcttgatgaagaatgggaagcgattctgaaagat
cgcgagttccttcgttctgttgctaagggggacgaggaaatgatgcagctgccaattaat
gtgcagcggatccttgaatcggctaaaaccaccttccgcatcaaggaaggcactattagt
gatcttcaccctgctgaagttattcctcaggtccaagctttgttggatcgtctcgtggtt
gttcgtggtgacgatttgatttcacaggaggcccaaaccagcgctacgctccttttcaag
gcgcagcttcgctcgagattagcatttaagagactcgtcactcaatactcgatgaacaag
cttgcttttaaacacgttctgggagctattgaaatgcgtttctcgcgtgcacaggcccct
cctggtgaaatggttggtgttttggctgctcaatctatcggagagcctgccacgcagatg
acactgaacaccttccactttgctggtgttagttctaagaacgtcactctcggtgttcct
cgtttgaaagaaattttgaacgttgctacaaatatcaagactccctcgatgacagtctat
caagaaccacataagaagcataacaaggaatctgccaagcaacttcgtagtgctgtggag
cacacgagccttcgttctgttactcaagccaccgagatctattatgatccagacattcaa
tctactgtcattgacaacgatagggacatggtggagtcttacttcattattcctgaggac
gtcacggacgacgctgcccatcagtcgaagtggctactacgtatcgttctcagtcgtcca
aaacttcttgataaaggacttacagttcaggacgtggcttcaagaatcaaagagcaatac
ccgaaggatatcgcagtcatcttttctgataacaacgctgatgaacaggtcattcgcatt
cgtcagcttcacgatgtcaaggaagatgaagatgatgaggatatggagtacgatgtgact
ttgaaaaaactggaacagcaccttcttgacacccttaccctgcgtggtgtagccggtgtc
gagcgtgctttcatcaatgagaaggataacgtgcgcctcatggatgacggcgccttgttc
cagagcaaatcagacccactttgcaaagagtgggttcttgagacgagtggttcggcactg
gccgatgtccttaccattcccggggttgacagaagtcgtacatattccaatcagttcatc
gaggtctttgaagtctttggcattgaggctgctcgttcagctctcctgcgagaacttact
caggtgttggctttcgatggatcttacgtcaatcaccgccatctagcgttgttggtcgat
atgatgacagtgcgtggatatttgactccggttactcgtcatggtattaaccgtgccgat
aatggtgctttgatgaggtgttcgttcgaagagactgttgaaattctgctcgacgctgcc
gcttttggtgaacttgatgactgccgtggtgtttctgaaaatttgattctcggtcaaatg
gcaccggctggtaccggagaatttgacgtgtatgtcgatcaggacatgctcaacacggtg
gtttcgagtaacgcaaaccttggcttgacgggagctcttggggctaaggacgcaatcatt
aatgacggagctgcgacacagtatgacaacaattctccaatgatggaaaatggttatatt
ggaacgccggatcccgatgccaggttctctcctattcgacaaggcgggtcggagacgcct
ggtgggcttacgccttaccagccatctggtggcttgggcggcttcagtccagcacctcag
agcccaggtggttactctccaacgagccctttcaataccagccctgtatctcctggctat
tcgccgtcttccagctattctccggcgtctcctggaatggccattaccagtccacgttat
atgacatctcctggcttctccccgcagagtccaaacttccagccaacatcacctgcgtat
tcacctacgtcgcctgcttacggtcaggcctcgcccacatcaccgtcatactcccccacg
tctccacgcttttcgccttcgtcgccgaactacagtccatcatctcccaatttcagcccg
gcctctcctgcgtttagcccaagctctccgacatacagcccgacgagcccagcaattggt
ggcagcagacaattctcgccatcttcgccaacgtcgcccaagtattctcctgcatcgcca
ggatggtcacccacgagcccggagatctactctcccacctctccaaatatccatgggtcc
ccgacgtctcccatgcgcggcgcaacttccccaagttacagtcccacttcgccgcagtat
aacccgacaaagatgaggtcctggtcgcggtttttccttccgctggtgctgctgtcgctg
ttgctgggcgcactggtcgaatgtcgaagtcattcgacgtctgtatcaacatcgaatggt
ccgtctgagaactttggcaagggcacggaagacaacacgtttgcaggaaacgatggcaga
gatctcgtggaatccgccctacaaaagctccgagagcttaaaatatcccccgcggcgagc
tcgaaaccttcaggcttggtgggctacggcttgcactacgccaaacatgcattctatctt
ttatttatgaacgggcctccactagaggaccagtcggattcggactcccaatcatatcgg
ttagacccggatctggcaaaggcggttaacgagttggaggttgcggcaacggaaacacag
aacccggatgctatgttcttgttggcagagatgaacttttacggcaactactcgcatccg
cgcaactttaaggaggcttttaaatggtatcacgacctcgccctatcaaccggcaatagc
tcggcgcaatatatgatcgggtttatgtacgcaacaggcattgggggtgcagtggagcgc
gaccaaggcatggcgctgctatatcacaagtttgccgcagagcaaggaaataccagatca
gagatgactctggctttccggcaccatattggtattggaacgcatcggaactgcgattcg
gctacgcattactataaacgagttgccgacaaggccattgcttattggagatctggcccc
cccggaggctacaacatgcctcggcagtcatttagatgggcggacgacgaagggggtgtt
tatggtgaaggcgccagtgtgtcgagttcaggaccaaacgccaatagagatagtggacaa
ccgagtgcagaagctagtttggaagatatcattgagtatttggacctattgtctaaaaag
ggaaacttgaaggccaccttgagtcttggaaagtggcactacgacggttcaaggaacctg
cctcggaactatcgcaaggctatgaaatactttagagcagtcgcaaaacgctattggacc
aaagacggcgccatcattgcaaaccaccctcctgaaattgaagcggctgcagcaaaggcc
gctggacacattggcttgatgtatctccgaggagaaggggtggagcagaattttgctacc
gccatggcgtggttcaaacgtggtcttgctaatggagatcctctgtgtcaacatgaaatc
ggcttgatgtatttgcatggctatggtgtcactcaggatgcctttaaagcttccgggtac
ttcaaggcagccgccgagcaggactttgcagccgccgagaccagacttggggctctcttt
ctcgaccagggagatgtacaaacagctacgaggtattttgaacttgctgcccgtctgggt
tggatggaggcgttttactacctggctgaaatagccaattttggaattggtcgggaaaga
cactgcggtatggcatccgcgtactacaagatggtcgcagaaaaggccgaacaagttcat
tcgtcatttgcggaggcgaacaaggcgtatgaaaatgatgatcatgatacagccttgatt
gcagtgatgatggccgccgagcaaggctatgagcacgctcaatccaacgttgcttatctt
cttgatgagcagcaatctgtcatttcactgggcaaaatcctcccatgggcaaaaaagcga
cgatcatcgcttctccggaacactgcattggctttgatttactggactcgctcagcgcga
caatcaaacattgattctttggtgaaaatgggagattactatctcaagggtataggctca
tctgtcgatgctgagaaagcttctacatgctaccatacagctgccgaaggccatcatagc
gcacaagcgtattggaatttaggctggatgcacgagaacggcgttgcagtggatcaagat
ttccacatggcaaaacgctactacgatttagccctcgaaaccaaccatgaggcatacttc
cccgtgaagctcagcttgatgaagctacgtcttcgtcatttctggaaccgtatcacgaac
ggaaaagtgaatggcattcaagacgagaaagaaaacagagcgccgcgaaccttcaaggag
tggatcatcgctttcttggaaaacgacgaggaagaagccctctaccaggcccagctactc
agagagcgcgaagagaacggtgacattctcggcacgcatcaccctcatcgagccgagaat
gacgatacgggatattatgacgagctcgagcttgatatagacgaaagtgtgttcgaagcg
ctaatcatcgtcgctctggccgcaacactgttgattctggtatacattcgacaacgaaat
cgacgagatggcgagaacgccggcaatggccagcaacaagccgccggaggccagaatgga
cagggagccaatgttgctgctaacaacaacaataataatgaccggggtctctttcctcgt
cctgatcaaccggaatttgcacagtgggctgcaggggggtttaactcaccagccatgggt
gaaagacacgcaaatatcaaacgacgtcgtctcgacgaagcgacttcggcactggcacgt
ccgttcaagtcacctttgcgcaaagatggcgatgttgacccatctaacaagaacgacaag
gagggcggcatgagcgatgcagacaaatcttttcgtgtcgccacatcagaggacgctatg
gttcacaaacctgtgctttcctcagcgcctcctcgatactccataactcctcgccaatat
agagcacctctcaaaatggacccggagcttgtcgctctccagaaagagcaaatatcactc
cggtctcgcctagcgaccctccgttctcaggtcgacaccgcacagcaggctctgaggatc
gagtcttcgcctagagacgaggagttgcaagccttgacagaaaaatggaagaaagtcagc
cagaacgtcgcggatgagttgtttgtctctgccaaagacaggatcgaaaggatgggtggc
gttgatgcttggagagagaaggagaggatgcgaaaagtacagatgagctggggcgatgac
gaaggcagagagactgaagtaccggatgactttgagagaacttccagtgccgagatcact
agttcttcttcctctactcccaaagaggatgaaaatgcaagtatcctaatggcaacccca
tttcattcgctaattggtttctga

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