Talaromyces rugulosus: TRUGW13939_09621
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Entry
TRUGW13939_09621 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
trg
Talaromyces rugulosus
Pathway
trg03018
RNA degradation
trg03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TRUGW13939_09621
09123 Folding, sorting and degradation
03018 RNA degradation
TRUGW13939_09621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trg03019
]
TRUGW13939_09621
03041 Spliceosome [BR:
trg03041
]
TRUGW13939_09621
Messenger RNA biogenesis [BR:
trg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TRUGW13939_09621
mRNA degradation factors
5'-3' decay
Lsm complex
TRUGW13939_09621
Spliceosome [BR:
trg03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
TRUGW13939_09621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
55997104
NCBI-ProteinID:
XP_035348634
LinkDB
All DBs
Position
V:join(3073513..3073537,3073601..3073657,3073723..3073761,3073825..3073852,3073916..3073979,3074041..3074079)
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AA seq
83 aa
AA seq
DB search
MASQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNQEKLP
KILLNGNNVCMLIPGGEGPVNSS
NT seq
252 nt
NT seq
+upstream
nt +downstream
nt
atggcttctcaattattgcctcttgaactgatcgacaagtgcgtcggctcaaagatctgg
gttgtgatgaagggcgacaaggaattctccggtacattgctcggctttgacgactatgtc
aatatggttctcgaggacgtcacggagtttgattactctggaaaccaagaaaagcttccc
aagattctccttaacggaaacaatgtgtgcatgttgatacccggaggggaggggccagtc
aatagctcataa
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