Treponema ruminis: DYE50_05295
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Entry
DYE50_05295 CDS
T07166
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tri
Treponema ruminis
Brite
KEGG Orthology (KO) [BR:
tri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tri03016
]
DYE50_05295
Enzymes [BR:
tri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DYE50_05295
Transfer RNA biogenesis [BR:
tri03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DYE50_05295
Prokaryotic type
tRNA splicing ligases
DYE50_05295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QSI01987
LinkDB
All DBs
Position
complement(1236441..1236809)
Genome browser
AA seq
122 aa
AA seq
DB search
MLEVKGKYNTAKVFTDNLEESGRAQIERLCDQPYAADSKIRMMPDVHADAGRVMGRKEAR
YKLKMEDFEDSMKGVWSSTVCKDTIDEAPMAYKDMSEIVANIEPSAEIENIIKPIFNFKA
AE
NT seq
369 nt
NT seq
+upstream
nt +downstream
nt
atgttagaagtaaagggaaagtacaacactgcaaaggtttttactgacaaccttgaagaa
agcggacgtgctcagattgaacgtctttgcgaccagccttatgcagccgacagtaaaatt
cgtatgatgcctgacgttcatgcagatgccggacgtgttatgggccgtaaggaagcacgc
tataagctaaagatggaagacttcgaagattccatgaagggggtatggtcttcaactgtc
tgcaaagatacgattgatgaagctcctatggcttataaggatatgagcgagattgttgca
aatattgaaccaagtgcagagattgaaaacatcatcaaaccgattttcaattttaaggct
gcggagtaa
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