Treponema ruminis: DYE50_06665
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Entry
DYE50_06665 CDS
T07166
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tri
Treponema ruminis
Pathway
tri02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tri00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DYE50_06665 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tri03021
]
DYE50_06665 (rpoD)
Transcription machinery [BR:
tri03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DYE50_06665 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Sigma70_r4_2
Rv2175c_wHTH
PTHB1_hp
Motif
Other DBs
NCBI-ProteinID:
QSI02252
LinkDB
All DBs
Position
complement(1471612..1473393)
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AA seq
593 aa
AA seq
DB search
MDQELDPKVEKLLEYAKDKQIVSWDEINEILGQDFVNSPKMEDVLQLLTQNNIQVMEEVT
DLDEEADADDDDLLDDEDADEVGATDDELAAARLVNGDKDSNVDDPIRLYLREIGKEKLL
TAEQEVTYSKQMEEGENIIKDVIKRSGMMIPEFFAICQKAFAKIDPHEPGKARKEINEAQ
AEKRRLKSYYGENLKACKENMKIYMNLKKQLFEANQSREIFDNEQILELRTKILPELQKI
DIQSEEIDKFSAKFVEATQKISEFRHKQEHKMKELRISNPAELRSLGRRLAIHSEALKLE
NELGLKSDEIRDIYTQIQKIDRKLRRMEYDFENNVEEILTMADEIERGRKMLEKAKNKLI
NANLRLVVSIAKKYTNRGLQFFDLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAIT
RSISDQARTIRVPVHMIEQINKVVREGRQLMQKLGREPTDEEIAQQLGWPVTRVKQVKNV
AREPISLETPIGEEEDSQLGDFIEDKDVENPANQTAYTLLQEQLRSVLNTLPSREQEVLK
MRFGLDDGYSLTLEEVGLYFNVTRERIRQIEAKALRRLRHPRRASGLRDYIEM
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atggatcaggaactggatcctaaagttgaaaaacttttagagtatgctaaggataagcag
atcgtttcttgggacgagattaatgagattcttggtcaggattttgttaattcacccaaa
atggaagatgtgcttcaacttttaacccagaacaacattcaggtcatggaagaagttacc
gacctggacgaagaagccgatgcagatgacgatgatttgctcgacgatgaggatgcggac
gaggttggtgctaccgatgacgagctggctgcggccaggcttgtaaacggtgacaaggat
tctaacgttgacgacccaatccgcctttatctgcgtgaaatcggtaaagaaaagcttctt
actgcagagcaggaagttacatattccaagcagatggaagaaggtgagaacatcattaag
gatgtaatcaaaagatccggcatgatgattccagagttcttcgcaatctgtcagaaggca
tttgccaaaattgatcctcatgaacctggaaaggcccgtaaggaaatcaatgaggctcag
gctgaaaaacgacgtcttaagagctattacggtgaaaacctcaaggcctgcaaagagaac
atgaagatttacatgaacctcaaaaaacagctttttgaggcaaaccagtctcgtgaaatc
tttgacaacgagcagattcttgagttgcgtacaaaaatcctgcctgaattgcagaaaatc
gacattcagtcagaggaaattgataaattcagtgccaaatttgttgaggcaacccagaaa
atcagtgaattccgccacaagcaggaacacaaaatgaaggagctgcgcatttcaaatcct
gcagagctccgaagtcttggccgccgccttgcaatccattctgaagccctcaagcttgag
aatgagcttggccttaaaagtgacgaaatccgcgatatttatactcagattcagaagatt
gaccgcaagctccgtcgcatggagtacgattttgagaacaatgttgaggaaatcctcaca
atggctgatgaaatcgagcgcggccgcaagatgcttgaaaaggcaaagaacaagctgatt
aacgccaacctccgtcttgttgtttctattgcaaagaaatatacaaaccgcggacttcag
ttctttgatttggttcaggaaggaaacatcggtcttatcaaggctgtcgagaagtttgag
taccgcaagggctacaaattctcaacatatgctacatggtggatccgtcaggcaatcacc
cgctcaatttctgaccaggcccggacaatccgagttcctgttcacatgattgagcagatc
aacaaggttgtacgcgaaggccgtcagctcatgcagaagcttggccgtgaaccaaccgac
gaagagatcgcacagcagcttggctggcctgttacaagggtcaagcaggttaaaaacgtt
gcccgtgagcctatttctttggaaactccgatcggtgaggaagaggattcgcagttggga
gatttcatcgaggataaggatgttgaaaatccagcaaaccagactgcttacacgcttttg
caggagcagctcaggtcggttctcaataccttgccgtcgagggagcaggaagtcctcaag
atgcgctttggtcttgatgacggatacagccttactttggaagaagtcggcttgtatttc
aatgtaacccgagaacgaatccgacagattgaggctaaggctttgcgccggctccgacat
ccgcgccgggcaagtggtcttagggactatatcgagatgtga
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