Treponema ruminis: DYE50_06780
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Entry
DYE50_06780 CDS
T07166
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tri
Treponema ruminis
Pathway
tri03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DYE50_06780 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tri03400
]
DYE50_06780 (mfd)
Enzymes [BR:
tri01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DYE50_06780 (mfd)
DNA repair and recombination proteins [BR:
tri03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DYE50_06780 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
GP46
Motif
Other DBs
NCBI-ProteinID:
QSI02271
LinkDB
All DBs
Position
complement(1490888..1494586)
Genome browser
AA seq
1232 aa
AA seq
DB search
MKSLLTNYLLSVTNGWNDFLSDVKNLASGQYFPAEIEGVSLTSSNFLTAHYIDFLRSRIL
SSLQYNATGRYSQSQQADGLSALSASSLDFVVVVPTEKEALDLTQDFETAFGESVEIFTL
PWWGLVPYRASAVGSAVFGQRSGVLSRLAYQARSLNANTKPRIFIITQRSLQTPLPSPQY
IRSLVFNLHKGLQNDPADLAEKLAALGYIRVPKVSLPGEFTLRGEVLDIFTPGEENPTRI
LFDFDEISSIKSFDVESQSTKELRDNLLIYPMKEVIWNDELVGRLESLFEKFGKNPDSDE
LDSAQNEGEKQTIFLALTEEAELAKRKLLEELRAGKESEGEELFYGVLWDKKYTIFDYIS
PNTTVFFYDYDRLNNMQENFDREYAGMYRTARQKFPVLPPSEMFIPFEVVSKMHENRVSF
RTLHTETDEEENSNQDVNFFKIECEPPKSFFGNINYLKEQLEDLQGEGWKIYVFADNENQ
SLRIKEILKNFIDKPAEGEYLDRLNKNAKKGIPYFPLTVYPKAITAGFGISETKTLVIQE
NEIFGRRKHVPKSIRSAKSQAIDTFVELNEGDFVVHVNYGIGIFRGIQRVKAMGNERDYI
KLEYADEEFAFVPIEQVNLVQRYIGNEGDNPRLDRIGSKSWENRKNKAKKAVEDLAEKLI
ALYSRRKASRGYPFPKDGEWQTAFEAAFPYEDTPDQFNVSKEIKADMEKPVPMDRLVCGD
VGYGKTEIAMRAAFKAVMGGKQVAFLAPTTILAEQHYETCVERFANFPVTVAQLSRFVSP
AEQKKIIAKVAAGEVDILVGTHRIIQKDVIFKDLGLMIIDEEQRFGVKDKEKLKTMKANI
DSLAMSATPIPRTLHMSLLKIRDMSLLTTPPQTRKPIETIVDAYTEERVAKAIRQEVERG
GQVFYLHNRVETLEDVRRKLQQIVPEMMIDVAHGQMTAEELDDIFRRFKMGGFHILIATT
IIENGIDIPNVNTIIIDRADMYGVSQLYQLRGRVGRSDRKAYAYLLYPENKVLSEVAMKR
LQVISDFTELGSGFKIAMKDMEIRGAGNLLGRDQSGEVYSVGFDLYVKLLNEAVERLMNS
ETYEAQNEVLMELEYSGFIPDTYIPNLQTKMEVYKKIAGVQSKDELEGMYLELEDRFGPI
PDEVYSLLSLAEVRVIAKKLYISSIKEKQGTLQIEFSKVSDIKIDRVLKLIKESAGKVKL
DPSKPNMILMQAGKIGLKEKSEFIREKLEALV
NT seq
3699 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattattaacaaattatcttctttctgtgacaaacggatggaatgactttctt
tctgatgtaaaaaatctcgcttccgggcaatatttccctgctgaaatagagggtgtgtct
cttacttcttcgaattttcttacagcccactatattgatttccttcgttccagaattctt
tcttcccttcagtataatgcaaccggccgctattctcagtcccagcaggcggatggtctt
tcagctctttcggcttcatcccttgattttgtagtcgtagttccaaccgaaaaagaagcc
cttgatttgactcaggattttgaaacggcttttggtgaatctgtagaaatttttactctt
ccttggtggggactggttccttatcgggccagcgcagtcggttcggctgtttttggccag
cgttccggagttctttcccgccttgcctatcaggcccgctccctcaatgcaaatacaaag
ccccggatttttataattacccagcgttccttgcagacgccacttccttcgcctcagtat
atacgctcgcttgttttcaatttacacaagggactgcagaatgatcctgctgatttggca
gaaaaacttgcggctttgggctatatccgtgttccgaaagtcagtcttccaggcgaattt
acccttcgtggcgaggtcctcgatatttttactcctggtgaagaaaatccaacgcgaatt
ctttttgattttgatgaaatttcttctattaaatccttcgatgttgaaagccagtcaact
aaagagctgcgtgacaatcttttgatttatccgatgaaggaagtaatctggaatgatgag
cttgtcggccgccttgaaagtctttttgaaaaattcgggaaaaatcctgattctgatgag
cttgattctgctcagaatgagggcgaaaaacagacgattttccttgcccttaccgaagaa
gccgagcttgccaaaaggaagctgcttgaagaactcagggctggaaaagaaagtgaaggc
gaggaacttttttacggcgttctctgggataaaaaatacactatttttgactatatttca
ccgaatacgacagtctttttctatgactatgaccgtcttaacaacatgcaggaaaatttt
gaccgtgagtatgcgggaatgtaccggactgcccgccagaaatttcctgttctgccgcca
agtgaaatgttcattccttttgaagtcgtttcaaaaatgcacgaaaaccgggtttccttc
aggactttgcataccgagaccgacgaagaggaaaattcaaatcaggacgttaattttttc
aagattgaatgtgaacccccgaaaagtttctttggaaacatcaattatttaaaggagcag
cttgaagatttacagggcgagggctggaagatttatgtctttgccgacaacgaaaatcag
tcgctccgaatcaaggaaatcctcaaaaacttcatagacaagccggctgagggcgaatat
cttgaccgcctcaacaaaaacgcgaaaaaaggcattccttattttccgctcacggtttat
ccaaaggcgattacggcaggattcggaatttccgagacaaaaacgcttgtaattcaggaa
aatgagattttcggccgccgcaagcatgttccaaagtcaatccgaagcgcaaaatctcag
gctattgatactttcgtcgagcttaacgagggcgattttgtagttcatgtaaattacgga
atcggaatcttccgcggaatccagcgcgtaaaggcaatgggtaacgagagggactacata
aagcttgaatatgctgacgaagaatttgcctttgttccgattgagcaggtaaatcttgtc
cagcgttacatcggaaacgagggcgacaacccccgacttgaccgaataggctcaaaatca
tgggaaaaccgcaagaataaggccaaaaaagccgtcgaggacctggcagaaaaactcatc
gccctctattcaaggcgaaaggcaagccggggctatcctttccccaaggacggcgagtgg
cagacagcctttgaggcagccttcccatatgaggacacacccgaccagttcaatgtctca
aaggaaatcaaggcggacatggaaaagccggttccgatggacaggctcgtctgcggcgac
gtaggctatggaaagaccgaaattgcaatgcgggcggctttcaaggctgtaatgggcgga
aaacaggtcgctttccttgctccaacaacaattcttgccgagcagcattatgaaacttgt
gtcgagcgttttgcaaatttcccggttacggttgcccagctttcccgcttcgtaagccct
gctgaacagaagaaaatcattgcaaaagttgcggctggtgaagtcgatattttggtcgga
acccaccgaatcatccagaaggacgttatttttaaggatctgggactcatgatcatcgac
gaggaacagaggttcggcgtaaaggacaaggaaaaactcaagaccatgaaggccaacatc
gactcccttgccatgagcgcaactccgattccgcgaacccttcacatgagcctcttgaaa
atccgcgacatgtcccttcttacaacgccgcctcagacccgtaagccgattgagacgatt
gttgacgcctacacagaagagcgggtcgcaaaggcaatccgtcaggaagtcgagcggggc
ggtcaggtattctatcttcacaaccgggttgagactcttgaagacgtccgccgcaagctt
cagcagattgttcctgagatgatgattgacgttgcccacggacagatgactgccgaggaa
ctggacgacattttccgccgtttcaagatgggcggcttccatattctgattgcaactacg
attatcgaaaacggaatcgacattccgaacgtaaacacgattatcattgaccgtgccgac
atgtacggtgtaagccagctttatcagctgcgtggccgggtcggacgaagcgacagaaag
gcatacgcatatcttttgtatcctgaaaacaaggttctttcagaagttgcgatgaaacgt
cttcaggtcatttctgactttaccgagcttggttcgggctttaagattgcgatgaaggac
atggaaatccgcggtgcaggcaatcttttgggacgggaccagagcggcgaagtttattca
gtcggtttcgatttgtacgtcaagcttttgaacgaggccgtcgagcgcctcatgaactca
gaaacttacgaggctcagaacgaagtccttatggaactcgaatattcaggcttcattcct
gatacttatattccaaacctgcagaccaagatggaagtttacaagaaaatcgctggagtt
cagtcaaaagacgagcttgaaggaatgtatcttgagcttgaagaccgttttggcccgatt
cctgatgaggtttacagtcttttgagtcttgcggaagtgcgtgtaatagccaaaaagctt
tatatttcttcaataaaagaaaagcagggaaccctgcagattgaattcagcaaggtcagc
gacataaaaatagaccgggttctcaaactcatcaaagaaagtgccggcaaggttaagctt
gacccaagcaagccgaacatgatccttatgcaggccggaaaaatcggtcttaaggaaaaa
agcgaatttatacgcgaaaaacttgaggcactggtctaa
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