KEGG   Treponema ruminis: DYE50_08155
Entry
DYE50_08155       CDS       T07166                                 
Name
(GenBank) GAF domain-containing protein
  KO
K02584  Nif-specific regulatory protein
Organism
tri  Treponema ruminis
Pathway
tri02020  Two-component system
Brite
KEGG Orthology (KO) [BR:tri00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    DYE50_08155
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:tri03000]
    DYE50_08155
Transcription factors [BR:tri03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    DYE50_08155
SSDB
Motif
Pfam: Sigma54_activat AAA_lid_14 Sigma54_activ_2 GAF GAF_2 GAF_3 AAA_5 AAA HTH_37 HTH_8 AAA_2 ATPase nSTAND3 AAA_14 AAA_16 AAA_22 HTH_3
Other DBs
NCBI-ProteinID: QSI02539
LinkDB
Position
complement(1850382..1851929)
AA seq 515 aa
MSDLNSLSLEQLKTLIEINGRINSNYSDINALLVYILESAMRLVHCESSSLLLNKENGSL
RFVVALGPKGAEAKNIPVAKNSIAGWVVENNKSLILNNVASDPRFSTTVQEKTGYVSRNM
LAIPMRVKGKCIGVIELLNKAEQLAFNDDDLAVLESLADQAAIAYINADSYRSAKDKISV
LSSKIENGSDYHPFVARSAAVLDLIRVIDEVAKTNTTILITGESGVGKELFAEQLHIKGS
RREKPFVRVNCAALSPALLESELFGHVKGAFTDAVTDRIGRFEASDGGTIFLDEIGELSL
DLQAKLLRVLQEHKFEKVGSNETISVDVRVVAATNRNLEQMVQDGNFRSDLYYRLNVVPL
NIPPLRERKDDIEPLASFFLDRFSRETKKNFTGFSQAALRTLYDYYWPGNVRELENSIER
ACVLGKPPMVQAEDLRINALPSADSASSASKEISDFASEVYDEDDKTLKTAINRFKAAYI
TKILNETSWNQTEAGKILGIQRTYVSRLLNELNIR
NT seq 1548 nt   +upstreamnt  +downstreamnt
atgagtgaccttaattcgctttcgcttgaacagttaaaaacactcatcgaaataaatggt
cgaataaattcaaattattctgacataaacgcattgctggtttatatccttgaatcggca
atgcgtcttgttcattgtgaatcatcttcacttcttctaaacaaggagaacggttcgctc
cgtttcgtagttgcccttggtccaaaaggtgccgaggcaaaaaacattcctgtcgcaaag
aattccatcgccggctgggtagtcgagaataacaaatcccttatcttgaataatgttgct
tctgatcctcgtttttctactacagttcaagagaaaactggctatgtaagccgaaacatg
cttgcgattccaatgcgcgtaaaaggaaagtgtatcggagttatcgagcttttgaacaag
gctgagcagctcgcctttaacgacgatgatctggctgttcttgaaagtctggctgatcag
gctgcaattgcttacatcaacgctgattcataccgttctgcaaaagataaaatttccgtc
ctcagttcaaaaattgagaacggttcggattatcatccctttgttgcacgaagtgcggca
gttcttgatttaatccgtgtgattgatgaagttgcaaagacaaacactacaatccttatt
acaggcgagagtggtgtaggcaaagagctttttgctgagcagcttcatatcaaaggttcc
cgccgtgaaaagccttttgtccgcgtaaactgtgcggctctttcaccggccttgcttgaa
agcgagctttttggtcatgtaaagggtgcttttactgatgccgttactgacagaatcggt
cgttttgaggcgagtgacgggggcacaatcttccttgatgagattggtgagctttccctt
gacttgcaggcaaaactcctccgggtcttgcaggaacataaatttgaaaaagttggatct
aacgaaacgatatccgttgatgtccgcgtagttgctgcaacaaaccgtaatcttgagcag
atggttcaggacggtaatttccgaagtgatttgtattaccgccttaacgtcgtgccgctc
aatattccgcccttgcgggagcgaaaggatgacatcgagccactggcttccttcttcctt
gacaggttcagccgcgaaaccaaaaagaatttcacaggtttttctcaggctgccctgcgt
accttgtatgactattactggcctggaaacgtccgtgagcttgaaaactcaatcgaacgg
gcctgcgttcttggaaaaccgcctatggttcaggccgaggacttacggattaatgccctg
ccttctgcagactcagcttcttccgccagcaaggaaatctctgattttgcctcggaagtt
tatgatgaagatgataaaacactaaaaacagcgataaacagatttaaagctgcttatata
acgaagattctgaatgaaacgtcatggaatcagactgaagctggtaaaatactcggcatt
caaagaacttacgtttcgcgattgcttaatgagttgaatatacgctaa

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