Treponema ruminis: DYE50_09060
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Entry
DYE50_09060 CDS
T07166
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
tri
Treponema ruminis
Brite
KEGG Orthology (KO) [BR:
tri00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tri03016
]
DYE50_09060
Enzymes [BR:
tri01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DYE50_09060
Transfer RNA biogenesis [BR:
tri03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DYE50_09060
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GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QSI02714
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Position
2088051..2089958
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AA seq
635 aa
AA seq
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MKKNSVVIYKNLPALVGERDGDKFLVSWCVSRATASGKKAVYASQKVREKDVILLCDGEA
SSIDALLDFAECACAEKSDVKSQIAEIHELLLSDEETAALEQTFSDMADLLRGELNANES
WGIYSALKSSYEFEEILRDNQIFFIPRSAEKITELKNKAFEKEHAEEIRAAFIERLKAKN
LLPEDSKFMGDVEALALGTTDKSKTMKDAGFKELPEKAHKLLLDTKIWDITRNPYPVRLG
LSAKSANVSLGLPPEEERVRVPGLSYAIDSEWSTDPDDAIAFDGEFLWVHIADPACFVTP
DSEIDKVARGRGATLYLPEGAARMLSEDCLEDYALGLRQESRALSFKIKLNENGDLKDCE
VLRTIVDVKRLSYKKADELKESPELKPLFEIARRNFERRCKAGAVNISIPEVHITVEPET
KEVTFEDVPRYESGEVVREAMVLAGEGAAKFAFKNNIPFPFISQDVPEVPKDIPEGLAGQ
FRLRKCMRKRNVNITPASHAGLGVGMYSQVTSPLRRYGDLLGHEQLRAFLKGEALIDKDT
MLMRMSEGDAAMQASKKAERNSRTHWTLVYLLQHPDWQGEAICVDKQPGRALYFISQFGM
ETTIGGEAPVDLNGTVQLKAGKIDLPNLEVVFTVI
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaattctgtcgtaatctataaaaatctgcctgctcttgtcggtgagcgggat
ggtgataaatttcttgtttcatggtgcgtgtcccgtgctacggccagcggtaaaaaggcc
gtttatgccagccagaaagtccgcgaaaaggatgtaattcttttgtgtgatggagaggct
tcttccatcgacgccctccttgattttgctgaatgtgcctgtgcagaaaagagcgacgta
aaaagccagattgcagaaatccacgaacttttgctgagtgatgaagagacggccgctctt
gagcagactttttctgatatggcagaccttcttcgtggtgagcttaatgccaacgagtcg
tggggcatttattcagccctcaaatcttcctacgaatttgaagaaatccttcgcgataat
cagatattctttattccccgttctgccgaaaaaatcaccgaacttaaaaacaaggctttt
gaaaaagaacatgccgaagaaatccgtgctgcctttattgagcgcctcaaggcaaaaaat
ctccttccagaggattcaaaattcatgggggacgttgaagctcttgccctgggaacaacc
gataaaagcaagacgatgaaggatgccggctttaaggaactgccggaaaaggcccataag
cttcttctcgatacaaaaatctgggatattacgagaaacccctatcctgtccgcctgggg
ctcagtgcaaaaagtgcgaatgtctcccttggccttccgccggaagaagagcgtgtccgc
gtgccgggcctttcctatgcgatagacagcgagtggtcaactgacccggatgatgcgatt
gcctttgacggagagtttttgtgggttcatattgcggatccggcctgttttgttactcct
gattctgaaatcgacaaggttgccaggggaaggggagcgactctttatcttcctgaaggg
gctgcccgaatgctgagtgaagattgccttgaagactatgccttgggactgcgccaggaa
agccgggctttgagttttaagattaagcttaatgaaaacggggacctgaaagactgtgag
gttttgcgcacgattgttgacgttaagcggctctcatacaaaaaagccgatgagttaaag
gaaagtcctgaattaaagcctctttttgaaatcgcacgacgtaattttgagcgaaggtgc
aaggctggggcggttaatatctcaattcctgaagtccatatcacggtcgagcctgagaca
aaagaagtgacttttgaagacgtgccccgatatgaaagcggtgaggtagtccgtgaggca
atggttttagcgggcgagggtgctgcaaaatttgccttcaagaacaatattcctttcccg
ttcatttcacaggacgttcctgaagtgccgaaggatatcccggaagggcttgcggggcag
ttccgtctcagaaaatgcatgagaaagagaaatgtgaacattactccggccagccatgca
ggtcttggagttggaatgtattctcaggtgacttctccgctccgccgttatggcgatctt
ctcggtcatgagcagctccgtgccttcttgaagggtgaggctctaatcgataaggacact
atgcttatgaggatgagcgagggagacgccgcaatgcaggcttccaaaaaggccgagcgc
aacagccgcactcactggacccttgtttatctcttgcagcatcctgactggcagggtgag
gcgatttgcgttgacaagcagcctggccgtgccctgtatttcatcagtcagtttggaatg
gaaactacgattggcggtgaagccccggttgacttgaacggcacagtgcagctaaaagcc
ggaaaaattgaccttcctaacctggaagtcgtattcacggtaatataa
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