Thermococcus radiotolerans: A3L10_03995
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Entry
A3L10_03995 CDS
T05177
Name
(GenBank) RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
trl
Thermococcus radiotolerans
Pathway
trl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3L10_03995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trl03019
]
A3L10_03995
Messenger RNA biogenesis [BR:
trl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
A3L10_03995
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
A3L10_03995
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
Auto_anti-p27
OB_RRP5_4th
Zn_ribbon_3
Prok-RING_1
Trm112p
Zn_ribbon_IS1595
RRP4_S1
DZR_2
DZR
Cas12f1-like_TNB
DUF5817
Zn_ribbon_PaaD
Motif
Other DBs
NCBI-ProteinID:
ASJ14339
UniProt:
A0A2Z2N944
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All DBs
Position
complement(734747..735334)
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AA seq
195 aa
AA seq
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MDEKRSARNGDLVLPGDYLGVIEEYFPGEGVKEENGELYAIRAGKVRIDQDKMEISVEPV
TDTPPLPQPGDIVIAKILEVKPQAAIVQLIKIEGRNDREIATSKLAGIHISQVREGYVEG
MSSEFKIGDIIRARVIANEKSPIQLSTKGHDLGVIYALCSRCRAPLVRRGDKLVCPRCGH
VETRKLSSLYRKLKV
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggatgaaaagaggagtgcaaggaacggtgacctggttcttcctggggactacctcggc
gtcatcgaggagtactttcccggcgagggcgttaaggaggagaacggtgagctctatgca
ataagggcaggtaaggtaaggatagaccaggataaaatggagataagcgttgagcccgta
acggacacacccccgcttccgcagccgggcgacatcgttatcgcaaagatacttgaggtc
aagccccaggcggcgatagttcagctcattaaaatcgaggggaggaacgacagggagata
gcgacatcgaaactcgccggaatccacatctcccaggtcagggagggctacgtggaaggc
atgagcagcgagttcaagataggcgacatcatcagggcgagggtcatagcaaacgagaag
agcccaatccagctgtccaccaagggccacgacctgggtgttatctacgccctctgctcc
cggtgcagggcgcccctcgtgaggcgcggcgacaagctggtatgcccgcgctgcggccac
gtcgagaccagaaagctgtcctccctctacaggaagctgaaggtgtga
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