KEGG   Thermococcus radiotolerans: A3L10_05780
Entry
A3L10_05780       CDS       T05177                                 
Name
(GenBank) RNA-binding protein
  KO
K03679  exosome complex component RRP4
Organism
trl  Thermococcus radiotolerans
Pathway
trl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:trl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A3L10_05780
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:trl03019]
    A3L10_05780
Messenger RNA biogenesis [BR:trl03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     A3L10_05780
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     A3L10_05780
SSDB
Motif
Pfam: ECR1_N_2 KH_6 RRP4_S1 KH_1 ECR1_N RRP40_S1 KH_2 KH_KhpA-B KH-I_KHDC4-BBP
Other DBs
NCBI-ProteinID: ASJ14665
UniProt: A0A2Z2MXT3
LinkDB
Position
complement(1053195..1053965)
AA seq 256 aa
MRRIFVKNRELVVPGTLLAQGPFKSGRGTFREGNRIYSTVVGLVEIRGDSIRVIPLEGPY
IPEVGDNVLGKITDVRFSNWSVDIGAPYEANLRVQDATEERIDILKTDLRKIFDIGDIIY
ARIKAYNEINQIDLTTRGMPFKGGPLRGGQIVKITPSKVPRLIGKGGSMINLIKKLTGTR
IIVGQNGWVWVSGKKEEMEKLAIEAILKVNRESHTQGLTDRVKELLITRLQELKERGVVE
EIPQIEEPNAGEGEGE
NT seq 771 nt   +upstreamnt  +downstreamnt
atgagacggatttttgtaaagaatagggaactggtggttcctgggactctgcttgcccag
ggaccgtttaagagcggaagaggaacgttcagagaaggcaacaggatatactcgacggtc
gttggactggttgagatcaggggagactccataagggtgataccactagagggaccgtac
atcccagaggtgggcgataacgttctcggcaagataaccgacgtcaggttctccaactgg
agcgttgacataggggcaccctacgaggccaacctgcgcgttcaggacgccacggaggag
cgcatagacatactgaagaccgacctgaggaagatattcgacattggcgacataatctac
gccaggataaaggcgtacaacgagataaaccagatagacctgaccacgaggggcatgccc
ttcaagggcggcccgctcaggggagggcagatagtgaagataacgccctccaaggtgccg
aggctcatcggtaagggcggttcaatgataaacctcatcaagaagctgaccgggacgagg
ataatagtcggccagaacggctgggtctgggtcagcggcaagaaggaagagatggagaag
ctcgcgatcgaggcgatactcaaagtgaacagggagagccacacccaggggctgaccgac
agggtcaaggaacttctcataacgagactccaggagctcaaggagcggggagtcgttgag
gagataccccagattgaagagccaaatgctggagagggtgaaggagaatga

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