Thermococcus radiotolerans: A3L10_05780
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Entry
A3L10_05780 CDS
T05177
Name
(GenBank) RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
trl
Thermococcus radiotolerans
Pathway
trl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3L10_05780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trl03019
]
A3L10_05780
Messenger RNA biogenesis [BR:
trl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
A3L10_05780
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
A3L10_05780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
RRP4_S1
KH_1
ECR1_N
RRP40_S1
KH_2
KH_KhpA-B
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
ASJ14665
UniProt:
A0A2Z2MXT3
LinkDB
All DBs
Position
complement(1053195..1053965)
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AA seq
256 aa
AA seq
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MRRIFVKNRELVVPGTLLAQGPFKSGRGTFREGNRIYSTVVGLVEIRGDSIRVIPLEGPY
IPEVGDNVLGKITDVRFSNWSVDIGAPYEANLRVQDATEERIDILKTDLRKIFDIGDIIY
ARIKAYNEINQIDLTTRGMPFKGGPLRGGQIVKITPSKVPRLIGKGGSMINLIKKLTGTR
IIVGQNGWVWVSGKKEEMEKLAIEAILKVNRESHTQGLTDRVKELLITRLQELKERGVVE
EIPQIEEPNAGEGEGE
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgagacggatttttgtaaagaatagggaactggtggttcctgggactctgcttgcccag
ggaccgtttaagagcggaagaggaacgttcagagaaggcaacaggatatactcgacggtc
gttggactggttgagatcaggggagactccataagggtgataccactagagggaccgtac
atcccagaggtgggcgataacgttctcggcaagataaccgacgtcaggttctccaactgg
agcgttgacataggggcaccctacgaggccaacctgcgcgttcaggacgccacggaggag
cgcatagacatactgaagaccgacctgaggaagatattcgacattggcgacataatctac
gccaggataaaggcgtacaacgagataaaccagatagacctgaccacgaggggcatgccc
ttcaagggcggcccgctcaggggagggcagatagtgaagataacgccctccaaggtgccg
aggctcatcggtaagggcggttcaatgataaacctcatcaagaagctgaccgggacgagg
ataatagtcggccagaacggctgggtctgggtcagcggcaagaaggaagagatggagaag
ctcgcgatcgaggcgatactcaaagtgaacagggagagccacacccaggggctgaccgac
agggtcaaggaacttctcataacgagactccaggagctcaaggagcggggagtcgttgag
gagataccccagattgaagagccaaatgctggagagggtgaaggagaatga
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integrated database retrieval system