Treponema sp. OMZ 838: JO41_03005
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Entry
JO41_03005 CDS
T03454
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
trm
Treponema sp. OMZ 838
Pathway
trm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JO41_03005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trm03019
]
JO41_03005
Messenger RNA biogenesis [BR:
trm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JO41_03005
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
Ly49
UPF0767
Motif
Other DBs
NCBI-ProteinID:
AIW88894
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Position
complement(648494..650035)
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AA seq
513 aa
AA seq
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MTGIMMVIVCIALVIIGLILGWTIRWLYARFQLSASEQRAERVLQEAIKEAEAQKKDILL
EAKEQLIRERNQQERENRERRSDLQRMERRLTQKEEQLDKRLELAEKNEKQLVERKDALD
EREKVLDGEEERYKEELERISGLTQAQAKDLIIQSLANEAKKDAQVLINRIEEEANLTAE
KKARDILVTTIQRLTTETTSDITVSTVSLPSDEMKGRIIGREGRNIRALETLTGVDIIID
DTPEAVVISCFDPVRKEIARIALERLILDGRIHPARIEEIVQKVTREISQTVYEEGEKVL
FDLGIHDMGQEMVRALGRLHFRTSYGQNVLQHSKEVAILAGTLAAEIGANVEIAKRGGLL
HDIGKGAEADSDKNHAEVGMEMTRKMSLDPRIVNAVGSHHNDIEPSCVESILVQIADAIS
AARPGARRETMDNYVRRLENLEAIAEGFQGVEKAYAIQAGRELRVLVNNEKIPDQEVKAL
GRDIAKKIENDLKYPGRIRVTLIRETRIIEYAR
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgactggaatcatgatggtgatcgtttgtattgctctcgtaattatcggtttaattctt
ggatggacgattcgctggctgtatgccagatttcaactatctgcttctgaacagcgtgca
gagcgggttttacaggaggctataaaagaggctgaagctcaaaagaaggatattcttctt
gaggcaaaagaacaacttattcgggaaagaaatcaacaagaacgagagaaccgcgaacgg
agaagcgaccttcaacggatggaacgccgcttaacccaaaaagaagaacagctggataaa
cggctggaattggcagaaaaaaatgaaaagcaactcgttgagcggaaggatgcgcttgac
gaacgtgaaaaagtcttggatggggaggaagaacggtataaggaagaactggagcggatt
tccggtttaacacaggcgcaggccaaggatttaattatccagagccttgcaaatgaggcg
aagaaggatgcgcaggttcttatcaatagaatagaagaagaagccaaccttaccgctgaa
aaaaaagcgcgtgatatcttggttacgaccattcagcggcttactacggagacaacaagc
gatataaccgtttctacggtgagcttaccgagtgatgaaatgaaggggcggattatcggg
cgtgaggggcgcaatatacgtgcgctggaaaccttgaccggcgtcgatattattattgat
gatacgcccgaggctgtcgttatttcctgtttcgatccggtgcggaaagaaattgcccgt
atcgcattggaacggcttattctggatggccgaatccaccctgcgcggattgaagaaatt
gtgcagaaggttacgcgcgaaatttcgcaaaccgtgtatgaagaaggggaaaaagtgctc
tttgacctcggtattcacgatatgggacaggaaatggtgcgtgcactcggacgcttgcat
tttaggacaagctacgggcagaacgtattgcagcattccaaagaagtcgctattttggca
ggtacgcttgccgcagaaatcggcgcgaatgtggaaatcgcaaaacgcggcggtttactg
catgatatcggtaaaggtgccgaagcggattccgacaagaaccacgccgaagttggtatg
gagatgacgcggaagatgagcctcgatccgcgtatcgtcaatgcggttggttcgcaccat
aatgatattgagccatcctgtgtggaatccatactggtgcagattgccgatgctatttct
gccgcacggccgggtgcccgccgcgaaacgatggacaattacgtcagacggctcgaaaac
cttgaagcaattgcagaagggttccaaggcgttgaaaaagcgtatgcaatccaagcaggc
cgcgagttacgggtattggtaaacaatgaaaagatacccgaccaagaagtgaaggccttg
ggcagggatattgcgaaaaagattgaaaatgatctgaaatatcccggccgtatccgcgta
acgctcatccgcgaaacacgtattatcgaatacgcacgataa
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