Treponema sp. OMZ 838: JO41_07925
Help
Entry
JO41_07925 CDS
T03454
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
trm
Treponema sp. OMZ 838
Pathway
trm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JO41_07925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trm03019
]
JO41_07925
Enzymes [BR:
trm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JO41_07925
Messenger RNA biogenesis [BR:
trm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JO41_07925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AIW89728
LinkDB
All DBs
Position
1668687..1670474
Genome browser
AA seq
595 aa
AA seq
DB search
MNFSNCNLDSTLLQGLEEAGYIECTPVQEQVFSAGMDGSDLYVQSQTGTGKTAAYLVTLM
QRMLAAGTEDRRPALILVPTRELAVQVEEEALKLGKHTGIRAASFYGGVGYQQQEAALKN
GVDLIIGTPGRVIDLEKSKTMKLKNVGFLVVDEADRMFDMGFYPDLRSLLSVLSKAEDRQ
TMLFSATLNTWVKNLAWEYTIDAKEITIDADNVTVDEINQKLFHVAAEQKMSLLLGILRN
EKPENAIIFCNTKKTTEIVAKRLRINGYATEFLIGDLPQPKRLHIIDSFKAGKLSCLVAT
DVAARGIDINDLAMVINYDLPNEAENYVHRIGRTARAGKTGAAYSLCSEQDVYNLPDIEK
YIEAKIPVVIPGEEDFEKDRSADQYIRLDRDSFDEERSGGRFGRKPRPGEKLRRDEKDSR
RGAKTTKPASRLADSKRKKKCAQGEDKTDRKSADSLGGLSFEERMAYYKKQYGKKLASQD
SAALADTNEGTGNAKESRNAQPAADKKGKAGAPATRAKNRQGQPEKKRRKGDKYVPSQTG
DTRQGAKQKRRQNQDRMPEQRSRTGKAPVQSSAQTQPVKQKTGIFAMLKKLFTGK
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttctaattgtaatcttgattccactcttttacaggggcttgaagaagccggt
tacattgaatgcactccggttcaagagcaggtgttttccgcaggaatggacggttccgat
ctttatgtacaatctcaaacaggtacgggaaaaacagctgcgtatctggtaacgctgatg
cagcggatgcttgctgcaggaaccgaagaccgccgccccgctttgattcttgttcccacg
cgggaacttgccgtacaggtcgaagaagaagcgcttaaattaggtaaacatacggggatc
cgtgccgcaagcttttacggcggcgtcgggtatcagcagcaggaagcagcgcttaaaaac
ggagtagaccttatcatcggtacccccggtcgcgttatcgatcttgaaaaatcaaaaacc
atgaagctgaaaaatgtcggctttttagtcgttgatgaagcagaccgtatgttcgatatg
ggcttttatcctgatctgcgcagcctcctttcagtattgtccaaggcggaagaccgccaa
acgatgctgttcagcgcgaccttaaatacgtgggtaaagaacctcgcatgggaatacacc
atcgatgcaaaagagatcaccatcgatgcggataatgtgacggttgatgaaatcaatcaa
aagctgttccacgtggctgcggagcaaaagatgtctttgctgctcggtatcttgcgtaac
gaaaaaccggaaaatgctatcatcttctgcaataccaaaaagacaacggagattgttgca
aagcggctgcgcattaacggctatgcgacggaatttctcatcggcgatttgccccaaccg
aagcggctgcatattatcgattcgtttaaggcggggaaactcagctgtttggttgcaacc
gatgtcgcggcgcggggaatcgatatcaacgacctcgcaatggttatcaactacgacctt
ccgaatgaggcggagaactatgtacaccgaatcggcagaacggcgcgggcgggaaagacc
ggcgctgcgtacagcctctgctcggaacaggatgtgtacaacctccctgatatcgaaaag
tatatagaagcaaagataccggttgttatccccggcgaagaggattttgaaaaagaccgc
agcgccgatcagtatatacggcttgaccgcgactcctttgacgaagaacgatccggtgga
cggttcggacgcaagccgcgacccggtgaaaaattgaggcgggatgagaaagactcacgg
cgcggcgctaaaacaacgaaacctgcatcccggcttgccgattcaaagcgtaaaaagaaa
tgcgcgcagggagaagacaaaaccgatagaaaatctgccgactcactcggcggcttgagc
tttgaagagcggatggcatactacaaaaaacagtacggaaaaaaacttgcctcacaggat
agcgccgcccttgcggataccaacgagggtacgggaaacgccaaagaaagccgcaatgct
cagcctgctgccgacaagaaaggaaaggcgggagcaccggcaacccgcgctaaaaaccgg
cagggacagcctgagaaaaagcggcgcaagggcgataaatacgttccgtcccaaacaggc
gatacacggcagggggcaaagcaaaagagacggcagaaccaagaccgaatgccggaacag
cggagtcgaaccggaaaggcgccggtacagtcttcggcacaaactcagccggtcaaacaa
aaaacgggcatattcgctatgctgaaaaaactgtttaccggaaagtaa
DBGET
integrated database retrieval system
