Trichomycterus rosablanca: 134300727
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Entry
134300727 CDS
T09921
Symbol
nod1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn04621
NOD-like receptor signaling pathway
trn05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
134300727 (nod1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
134300727 (nod1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
trn04054
]
134300727 (nod1)
Pattern recognition receptors [BR:
trn04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
134300727 (nod1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
CARD
LRR_6
NOD2_WH
LRR_4
AAA_16
AAA_18
AAA_22
NPHP3_N
AAA_30
NTPase_1
AAA_29
CreD
AAA_7
Motif
Other DBs
NCBI-GeneID:
134300727
NCBI-ProteinID:
XP_062841217
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All DBs
Position
23:57503..65217
Genome browser
AA seq
947 aa
AA seq
DB search
PGPEAGPGPGAESSLSSCKLLTLHREVLVNQVKNTQCLLDNLKLNGFFCNEDVELIQRSA
TKTDQVRKILEFVQSKGEEASAYFIYILHELYDAYIDLRPWFNSINYRPAACVMDLPVMN
TDPISRYSEKMRNELGRDTRFLTSYSQKEETLLEEFYTDTQMEILNERGESLGFLRSLDE
VLGEEGVFNQQAETILITGDAGVGKSILLQKLQNLWSNRALNTRVKFFFKFRCRMFRTFK
ETDEISLKDLIFKHNCYPDEDPDVEVFKYILRFPDTVLFTFDGFDELQMDFDLENVPEVV
SPEERTHPLHVFMNLLHGKMLKGSRKILTTRTGTEIQSRVIRKKVFLRGFSPEHLKQYLS
HHFPLQDPRDMVLVQLEANPHLCGLCSIPLFSWIIFKSFKHLQSMYDDVELPDSCITLTN
VFLLLAEVFLSRISRGAGMLKRSTRCTSDTFKSGLKMLLAFAKLALLGLENNSFIYSHEE
FSSCDLSKEDVQVGFLRPVGHYDACGRSATYEFLHLTLQAFLAAFCLVLDSDVTPDGILR
FFSKCEYKKPSRFTCVSCLGTSSSLRDTDPFQTNEHFQFTNLFLCGLLSKSNAVLLEHLV
PPVILKKKRMALKSYLTSSVKSHLSGLPRYPSTDIKGNKVHAMPNFLWMLRCIFEMHSEG
VARLTARGISADYIKLAYCNISSADCSALNFVLHHHRKCLGVDLDNNNISDYGVKQLTPS
FSKMTVVRFCVNQLTDSSVEVLALELIKHKIVKVLGLYKNYITDAGAELVAQIIEECPHL
LTVKLGCNQITSVGAKFLARAIQKSKSIFDVGMWGNSIGDEGADAFADAIKNHKSLTNLS
LSVNGITAAGGRSLAKALRQNSSLHIFWLIQNHISDDAAEELASAFQINSSLTHLMLIDN
QFSVGGVQHLAEGLKHNKTIKEVNLKGNLVGAEEESQFSDEKRLRFS
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
ccaggacctgaagctggaccggggcctggagctgagtcttctttgtcctcctgcaagttg
ctcactttgcacagggaggttctggtgaatcaggtgaagaacactcagtgtcttctggat
aatttaaagctcaatggattcttctgtaatgaagatgttgagctcattcagcgttcagct
actaaaacagaccaggtacgtaaaatcctggagtttgtgcagagcaaaggagaagaagct
tcagcatattttatttatattcttcatgagttgtacgacgcctacatcgaccttcgacct
tggtttaactccattaactaccgacctgctgcgtgtgtgatggaccttcctgtgatgaac
actgaccccatcagcagatacagcgagaagatgaggaacgagcttggtagagacactcgg
ttcctcacttcctactcacagaaggaggaaactctgctggaggaattctacaccgacacc
cagatggagatcctgaatgagcgaggagagagcctgggcttcctgaggagtttggacgag
gttctgggggaggaaggtgtgttcaaccagcaggcagagaccatcttaatcacaggagac
gctggagtgggaaaatccattcttcttcagaagctccagaacctgtggtccaatcgagca
ctgaacaccagagtgaagttcttctttaaattccgatgcaggatgttcaggactttcaaa
gagacagacgagatctctttaaaagatctgatctttaaacataactgctatccggacgaa
gacccggacgtggaggtttttaaatacatcctacggtttccagacaccgtcctcttcacg
tttgatgggtttgatgaactacagatggactttgatttggagaacgttccagaagtggtt
tctccagaggagaggactcacccacttcacgtttttatgaacttgcttcatggaaaaatg
ctcaaaggctctagaaagatcttgacaactcggactggcactgagatccagagcagagtc
attcgaaagaaggtgtttctcagagggttctcaccggaacatctcaagcaatacctgtca
catcattttccccttcaggatcccagagacatggtattggtgcagctagaggccaatcct
catctctgtggcctctgctccatcccgctcttcagctggatcatcttcaagagttttaag
catcttcagagcatgtatgatgacgtggagctgccagattcatgcatcaccctcaccaat
gtcttcttgttgctggccgaggtgttcctgagtcggatcagcaggggtgcaggaatgctc
aaaaggagcactcgctgcacctcagacaccttcaaatctggactgaagatgctcttggcc
tttgctaaacttgctctgctgggtttagagaacaacagtttcatctacagccatgaggag
ttttcttcctgtgacttgagcaaagaggacgtacaggtcggatttctgaggcctgtcggt
cactatgatgcatgtggacgttctgctacgtacgagttcctccatttgactctgcaggca
tttctggccgcgttctgtctagtcctggattctgatgtgactcctgatgggatcctgagg
tttttttccaagtgtgaatacaaaaaaccgtctcgttttacctgcgtttcctgtttgggg
acatcatcttctctgagagacacagatcccttccaaaccaacgagcactttcagttcaca
aaccttttcctctgtggcctgctatcgaaatccaatgctgtcctcttggagcacctggtt
cctccagtaatcctaaaaaagaagcgcatggctctgaagtcctacctgacatccagtgtg
aagagccacctgagcggcctgcctcgttaccccagcaccgacattaagggcaacaaagtg
cacgcgatgcccaacttcctctggatgctgcgctgcatatttgagatgcacagcgagggc
gtggcgcgactcacggccagaggaatctcggccgactacatcaaactggcgtactgtaac
atctcctcggctgactgtagtgccctcaactttgtcctccatcaccacaggaagtgttta
ggagtcgatctggacaacaacaacatcagtgactacggagtcaaacagctcaccccatca
ttcagcaagatgaccgtcgtcaggttttgtgtaaatcagctcactgacagcagcgtggaa
gttttggctcttgaactcatcaaacataaaattgtaaaagttttgggactttataagaat
tacatcactgatgctggagctgaactcgtggctcagatcatcgaggaatgtcctcacctc
ctcaccgtcaaactcggctgtaatcagatcacgtctgtgggagcaaagtttctggctcga
gccattcagaagagcaaatccatctttgatgttggaatgtgggggaacagtatcggggac
gagggggccgacgctttcgctgatgctataaagaaccacaaaagtttaactaatctcagt
ttgtcggttaatggaatcacggctgctggaggaagaagtttagcaaaagcgctgagacag
aattccagcctgcacatcttctggttgattcagaatcatatttcagatgatgcagcagag
gaactcgcctccgcctttcagataaactcatcactcacacacctgatgttaattgataat
cagttttctgttggtggagttcagcatcttgctgaaggtctgaaacacaacaaaaccatt
aaagaagtgaatctgaaggggaacctggtcggtgctgaagaagaatctcaattcagcgat
gagaaacgactccgattcagctga
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