Trichomycterus rosablanca: 134301035
Help
Entry
134301035 CDS
T09921
Symbol
arfgef1
Name
(RefSeq) brefeldin A-inhibited guanine nucleotide-exchange protein 1 isoform X1
KO
K18442
brefeldin A-inhibited guanine nucleotide-exchange protein
Organism
trn
Trichomycterus rosablanca
Pathway
trn04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
134301035 (arfgef1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134301035 (arfgef1)
Membrane trafficking [BR:
trn04131
]
Endosome - Golgi transport
Arf GTPases and associated proteins
Arf GTPase associated proteins
134301035 (arfgef1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec7
BIG2_C
Sec7-like_HUS
DCB
Sec7-like_HDS
Motif
Other DBs
NCBI-GeneID:
134301035
NCBI-ProteinID:
XP_062841625
LinkDB
All DBs
Position
23:18328062..18359747
Genome browser
AA seq
1829 aa
AA seq
DB search
MYEENQRTEKMFVSRALHKILSDKEVKKAHHSQLRKACELALEEIKAESEKLSPPAEDSK
SGSSTLPPIKSKTNFIEADKYFLPFELACQSKCPRIVCTSLDCLQKLIAYGHLTGSAPDS
TTPGKKLIDRIIETICGCFQGPQTDVGVQLQIIKALLTAVTSQHIEIHEGTVLQAVRTCY
NIYLASKNTINQTTAKATLTQMLNVIFARMENQALQEAKQMERERHRQHSPLSQQEPESP
QIQQHPDTPAKSPGQKVDGGSGVEGPQYESPEPENGSDFGPEENEQTEADQATAAERSVA
EQDSHGAEEEENLNYEEKAQEIVQSILKEVVSSVTGDAKESGEGEAETTPTSLEEEVGLG
SDSENVHANGIPGTPISATFTPSLPDDRLSVSSSDTQVSQESTAPAGPAPGAKFSHILQK
DAFLVFRSLCKLSMKPLSDGPPDPKSHELRSKVLSLQLLLSILQDAGPIFKTNEMFINAI
KQYLCVALSKNGVSSVPEVFELSLSIFLTLLSNFKTHLKMQIEVFFKEIFLYILETSTSS
YDHKWMVIQTLTRICADAQSVVDIYVNYDCDLNAANIFERLVNDLSKIAQGRGGHELGTT
PQQDLTLRKKGLECLVSILKCMVEWSKDQYVNPNSQTSLGLEKPSEQEANESKHSETINR
YGSINSLDSTASSGIGSYSTQMSGADNPEQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQ
EQGMLGTTPEDIAQFLHQEERLDSVQTGDFLGDNDRINKEVMYAYVDQMDFQGKDFVSAL
RLFLEGFRLPGEAQKIDRLMEKFAARYLECNQRQTLFASADTAYVLAYSIIMLTTDLHSP
QVKNKMTKEQYIMMNRGINDSKDLPEDYLSSIYNEIAGKKISMKETKELPLKSNKQSVAS
EKQRRLLYNMEMEQMAKTAKALMEAVSHVQAPFTSATHLEHVRPMFKLAWTPFLAAFSVG
LQDCDDTEVASLCLEGIRCAIRIACIFCIQLERDAYVQALARFTLLTASSGITEMKQKNI
DTIKTLITVAHTDGNYLGNSWHEILKCISQLELAQLIGTGVKARYISGTVRGREGFITST
KEQSPDEYLGIVGGTVDRKQIASIQESIGETSSQSVVVAVDRIFTGSIRLDGNAIVDFVR
WLCAVSMDELASPTHPRMFSLQKIVEISYYNMGRIRLQWSRIWEVIGDHFNKVGCNPNED
VAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKKNRSPTIRDMVVRCIAQMVN
SQAGNIRSGWKNIFSVFHLAASDQDESIVELAFQTTGHIVTNVFEKHFPATIDSFQDAVK
CLSEFACNASFPDTSMEAIRLIRHCAKYVSDRPQAFKDYTSDDMNVAPEDRVWVRGWFPI
LFELSCIINRCKLDVRTRGLTVMFEVMKTYGHTYEKHWWQDLFRIVFRIFDNMKLPEQQT
EKAEWMTTTCNHALYAICDVFTQYFESLSDVLLDNILAQLYWCVQQDNEQLARSGTNCLE
NVVILNGEKFTPETWDKTCNCMLDIFKTTLPHMLLTWRPAGAEGDHASQLDSDRQLDSLD
IQTRSEDQQSVSSMEKALAENRRQSQFSVASEIQEQRLFAALLIKCVVQLELIQTIDNIV
FFPATSKKEDAENFAAAQRDAPDADVQVETQDQGMYRYLTSAQLFKLLDCLLESHRFAKA
FNSNNEQRTALWKAGFKGKSKPNLLKQETSSLACGLRILFRMYMDPSRQDAWDEVQRRLL
NVCSDAVAYFLTLTSESHREAWTNLLLLFLTKVLKINDDRFKAHASRYYPLLCEIMQFDL
IPELRAVLRKFFLRIGLVFHIAHALEPEA
NT seq
5490 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaggagaaccagcggacggagaagatgtttgtgagccgagctctgcacaagatc
ttatccgataaagaggtgaagaaagcgcatcactcccagctgcgcaaagcctgcgagctc
gccctggaggaaatcaaagcggaatcagagaaattaagcccccctgctgaagacagcaag
tcaggctccagtactctgccccccatcaaatccaagaccaacttcatcgaagccgataag
tacttcctgccgttcgagctcgcctgccagtccaaatgtccgcgcatcgtctgcacgtcg
ctcgactgtttacagaaactcatagcttacgggcatctgacgggcagcgccccagacagc
accaccccggggaagaagctcatcgacaggatcatcgagacgatctgcggatgtttccag
ggcccgcagaccgatgtgggagttcagctgcagattataaaggccctgctgacggcagtg
acctcccagcacatcgagatccacgagggcacggtgctgcaggccgtgcggacgtgctac
aacatctacctggccagcaagaacaccatcaaccagacgacagccaaagccaccctcacc
cagatgctcaacgtcatcttcgcccgcatggagaaccaggcactccaggaggcgaagcag
atggagagggagcggcaccggcagcattcgccgctcagccagcaggaaccggagtcgccc
cagatccagcagcaccccgacaccccggccaagagtccgggtcagaaggtcgacggaggc
tcgggagtggagggcccccagtacgagagccccgagcctgagaacggctctgacttcggc
cccgaggagaacgagcagaccgaggcggaccaggcgaccgcggcagaacggagtgtagca
gagcaggactcacacggtgctgaagaggaggagaacctgaattatgaagagaaagctcag
gagatagtacagagtatactgaaggaggtggtcagctcagtgaccggagatgctaaagaa
agcggcgaaggggaggcggagaccacgcccacttcgctggaggaggaggtcgggctgggt
agcgacagcgagaacgtccacgccaacggcatccctggcacgcccatctccgccaccttc
actccgtccctgcccgacgacaggctgtctgtctcgtccagcgacactcaggtaagtcag
gaatccaccgctccggcaggacccgcaccgggggccaagttctcccacattttgcaaaaa
gatgccttcctggtgttccgttccctctgcaaactgtccatgaagccgctgtccgacggc
ccaccagatccgaaatctcacgagttgcgctccaaggtgctctcgctgcagctgctgctc
tccatcctgcaggacgccggacccattttcaaaaccaacgagatgttcatcaacgccatc
aagcagtacctgtgcgtggcgctgtccaaaaacggcgtctcttccgtcccggaggtgttc
gagctctccctgtccatcttcctcacgctcctgtccaacttcaagactcacctgaagatg
cagatcgaggtctttttcaaagagattttcctgtacatcttagagacgtccactagctcg
tacgaccacaagtggatggtcattcagaccctgaccaggatatgtgcagacgctcagagc
gtggtggacatctacgtcaactacgactgcgacctgaacgctgctaatatattcgagagg
ctggtgaacgacctctccaagatcgcacagggccgaggaggccacgagctcggcaccacg
ccgcagcaggacctgactttgaggaagaaaggcctggagtgtctggtctccatcctcaag
tgcatggtggagtggagcaaggatcaatacgtgaacccgaactctcagaccagcctcggc
ctggagaagccttcagagcaggaggcaaacgagtccaagcactcggagaccatcaaccgc
tacgggagcatcaactccctggactcgacggcatcctcgggcatcgggagctacagcacg
cagatgtcgggcgccgacaaccccgagcagttcgaggtgctcaaacagcagaaggagatc
atcgagcagggcatcgacctgtttaacaaaaaaccaaagaggggcatccagtacctgcag
gagcaaggaatgctgggaactacgcccgaggacatcgcccagttcctacaccaggaggag
agactggattctgtccagacaggagactttctcggagacaatgatcgcatcaacaaggag
gtgatgtacgcatatgtggaccaaatggacttccaggggaaggatttcgtctcggccctg
cgtctgttcctggagggtttccggctccctggagaggctcaaaaaatagatcgtctgatg
gagaaattcgctgctagatacttagagtgcaaccagcgacaaacgctgtttgcgagtgca
gacaccgcgtacgtcctggcttattcaatcatcatgttgactacggacctccacagtcca
caggtgaagaataaaatgacaaaagagcaatacatcatgatgaacagagggatcaacgac
agtaaggatttgccggaggactatttatcatccatatacaacgagatcgccgggaagaag
atctctatgaaggagacgaaggagctgccgctcaaatccaataaacagagcgtggccagt
gagaaacagaggcggctgctctacaacatggagatggagcaaatggccaagacagccaag
gctctgatggaggcggtgagccacgtccaagccccgttcaccagcgccacccacctggag
cacgtcaggcctatgttcaagctggcgtggacgccgttcctggcagccttcagcgtagga
ctgcaggactgcgatgataccgaggtggcgtctctctgcctggagggcatccgatgtgcc
atcaggatagcctgcatcttctgcattcagttggagagggacgcctacgttcaggctctc
gctcgcttcactttgctcacggccagctctggcatcactgagatgaagcagaagaacatc
gacaccatcaagaccctcatcactgtggctcatacggatggaaactacctgggaaactcc
tggcatgagattctgaagtgcatcagtcagttggaattggctcagctcatcggcacgggt
gtgaaggctcgctacatatccgggaccgtccggggcagagagggtttcatcaccagtacc
aaagagcagagtccggacgagtatctgggcattgttggtgggaccgtggatcgtaaacag
atagcgagcatacaggaatcgatcggagagaccagctcacaaagtgtcgtggttgccgtg
gacaggatatttacaggatccatcagactggatggtaatgcgatcgtcgatttcgtgcgt
tggctgtgcgccgtgtccatggacgagctggcctccccgactcacccgcggatgttcagc
ctgcagaagatcgtagagatttcctactacaacatgggtcgcatcaggctccagtggtcc
aggatctgggaggtgataggagatcatttcaacaaggtgggctgtaatcccaatgaggat
gttgcgatcttcgctgtggattcactccggcagctgtctatgaaatttctggagaaggga
gagttggccaatttcagatttcagaaggatttcttgcggccgtttgagcacatcatgaaa
aagaacagatcccccactatcagggacatggtggtgcgctgtatagctcagatggtaaac
tctcaggcagggaacatccgctcaggctggaagaacatcttctcagtgttccacctggca
gcttcagatcaggatgaaagcatcgtggagctcgccttccagaccaccggccacatcgtc
acgaatgtattcgagaagcactttccggccaccatcgactccttccaggacgctgtgaag
tgtctgtccgagttcgcctgtaacgcttctttccccgacaccagcatggaggccatccgt
ctgatccgccactgcgccaaatacgtttccgacagacctcaggcatttaaagactacact
agtgatgatatgaatgtagccccagaggaccgggtgtgggttcgaggctggttccccatc
ctgttcgagctgtcgtgcatcatcaacaggtgtaagctggacgtcaggaccaggggactg
acggtgatgttcgaggtgatgaagacgtacggccacacttacgagaaacactggtggcaa
gacctgttccgtatcgtcttcagaatctttgacaacatgaagctgccggagcagcagacg
gagaaagccgagtggatgacgacaacctgcaatcacgcactttacgccatctgtgacgtc
ttcacgcagtacttcgagtccctgagtgatgttctgctggacaacattctggctcagctc
tactggtgtgtccagcaagataatgagcagctggctaggtcaggcaccaactgcttggag
aatgtggtgatcctaaacggtgagaagtttacacccgagacctgggacaagacctgcaat
tgcatgctggacatctttaaaaccacccttcctcacatgttgttgacgtggaggccggcc
ggtgcagaaggcgatcacgcgagtcagctggactcggacagacagctggactctctggac
atccagactcgatctgaggatcagcagtctgtgagcagcatggagaaagccctggcagag
aatcggagacagagtcagttcagtgtagcttcagaaatccaggagcagagattgttcgcg
gcgcttctcatcaagtgtgtggtgcagctggagctcatccagaccatcgacaacatcgtc
ttcttcccggcgaccagcaagaaggaggacgctgagaacttcgccgcggcgcagagagac
gctccggacgccgacgtccaggtggagactcaggatcagggaatgtatcggtatctgacc
tcggcgcagttgttcaaactgctggactgcctgctggagtcgcaccgcttcgctaaagcc
ttcaattccaataacgagcagaggacggcgctttggaaggctggctttaaaggaaagtcg
aagcccaacctgcttaaacaggagacgagcagcctggcgtgtggtctgcgtatcctcttc
cgcatgtacatggatcctagcagacaggacgcctgggatgaggtgcagagacgcctcctc
aacgtgtgcagcgacgccgtggcttattttctcacgctgacgtcggagagtcaccgtgag
gcctggaccaacctgctgctcctgttcctcaccaaagtgctgaaaattaacgatgacagg
ttcaaggcccatgccagccgttactaccctctgctgtgtgagatcatgcagttcgacctg
atccccgagctgagagccgtgctgaggaagttcttcctgcgcatcggtctcgtgttccac
atcgctcacgccctcgagccggaggcctag
DBGET
integrated database retrieval system
