Trichomycterus rosablanca: 134301079
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Entry
134301079 CDS
T09921
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
trn
Trichomycterus rosablanca
Pathway
trn04140
Autophagy - animal
trn04148
Efferocytosis
trn05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
134301079 (vps41)
04148 Efferocytosis
134301079 (vps41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
134301079 (vps41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134301079 (vps41)
Membrane trafficking [BR:
trn04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
134301079 (vps41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
zf_RING_Vps8_fungal
Beta-prop_RIG_2nd
Beta-prop_HPS5
zf_RING_Vps8
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
TPR_7
TPR_PEP5_VPS11
TPR_17
zf-RING_5
Vps39_1
TPR_19
zf-rbx1
zf-C3H2C3
Helicase_PWI
Motif
Other DBs
NCBI-GeneID:
134301079
NCBI-ProteinID:
XP_062841693
LinkDB
All DBs
Position
23:complement(7723085..7759839)
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AA seq
854 aa
AA seq
DB search
MSEVGEQARKPNEESTDESEEEDSEEEPKLKYERLANGVTDVLQKDAASCMTVHDKFLAL
GTHFGKVFLLDIQGNITQKYEISSVKINQISLDESGEHVGICSEDGKVQVFGLYTREGFH
ENFDCPIKVVAVHPQFSKSNNKQFVTGGIKLLLYERNWLNRWKMSVLHEGEGTITNVKWR
ANLIAWANNVGVKIYDISTKQRITNVLRDNISLRPDMYPCSLCWKNNSTLIIGWGSSVKI
CVVKERDPTEMRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLYYVKENSEHMEEEFRA
RPRLDIIQPLPESCEDISSDALTVRNFQENECRDYRLEHADGEPLFYIISPKDIVVAKER
DQDDHIDWLLDKKKYEEALMAAEISFKNIKRHDVQKIGMAYINHLVEKRDFNTAARKCQK
VLGKNMDLWENEVYRFKTLKQLKAISQYLPRGDLRLRPAIYEMILHEFLTTDYEGFATLI
REWPGELYNNMTIVQAVKDHLKKDPTNSILLTTLAELYTYDQRYDRALEIYLRLRHKDVY
QLIHKHNLFSSIEDKIVLLMDFDKEKAVDMLLDNEDKISMDRVVEELKDRPELLHVYLHK
LFKRDHHKGQKYHERQISLYAEYDRPNLLPFLRDSIHCPLEKALEICQQRHYVEETVFLL
SRMGNCRRALQMIMEELGDVKKAIEFAKEQDDAELWEDLISYSIDKPPFITGLLNNIGTH
VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLQKMHRTQM
RGVRVDEENICEACHVTILPSDTAQAFSVVVFQCRHMFHKECLPSSGTVPGVQYCNICSA
KRRGPGSGILEMKK
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaagtgggagagcaggcaagaaagccaaatgaagagtccacagatgaatcagag
gaagaagatagtgaggaggaacccaaattgaaatatgagcgactggccaatggggtgact
gatgtcctgcagaaggatgcggccagctgcatgactgtacatgacaagtttctggctttg
gggacccacttcggaaaagtctttctactggatatccaaggaaacatcacccaaaagtat
gagattagctcggtgaagataaatcagatcagtctggacgagagcggggagcacgtgggg
atctgctcagaggatggaaaggtgcaggtatttggcctctacaccagagagggcttccat
gaaaactttgattgccccataaaagtggtggcagtacatcctcagttcagcaagtcaaac
aacaagcaatttgtaactggaggtatcaagttgctgctgtatgagagaaactggctgaac
cgctggaagatgtccgtcctgcacgaaggagagggaaccatcacaaacgtcaaatggagg
gccaaccttattgcttgggctaataatgtgggcgtgaaaatctacgacatcagcactaag
cagcgcatcactaacgtgttacgggacaacatcagtttgaggcctgatatgtacccctgc
agcctctgctggaaaaataacagcacacttatcattggctggggatcgtctgtcaagatt
tgtgttgtcaaggaacgagacccgacagagatgcgtgatctacccagtcgttatgttgag
atcgtgtcagcgtttgagaccgagttcttcatcagtggactggctcctttagctgatcag
cttgttactctgtattatgtgaaagagaattcagagcacatggaggaggagtttagggca
aggccacgtttggacattattcaaccgttgcctgagagctgtgaggatatttcatcagat
gctcttacagtccgcaactttcaagagaacgagtgcagagattacagactggagcacgcg
gatggagagcctctgttctacataatcagccctaaagacattgtggtggctaaagagcga
gaccaggatgaccacatcgactggctgctcgacaagaagaaatatgaggaggcactgatg
gcagcagagataagcttcaagaatatcaaaagacatgatgttcagaaaattggaatggcc
tacatcaatcacctggtggagaaacgggacttcaacacagcagctagaaagtgtcagaaa
gtgctggggaagaatatggacctttgggagaacgaggtgtaccgatttaaaactcttaaa
cagctcaaggccatcagtcagtacttacctcgaggagacctgcgccttagacctgccatt
tatgagatgatcctacatgaattcctcacgactgactacgagggctttgccacactgatc
cgcgagtggccaggagagctatacaacaacatgactatagttcaagcagtgaaggaccac
ctgaagaaggatcccacaaacagcatcctgctcaccacactagctgagctgtacacgtat
gatcagcgttatgaccgagctctggagatttacctgagactgagacacaaagatgtctac
cagctcatccacaaacacaacctcttctcctccattgaggataaaatcgtcctcctcatg
gactttgacaaggagaaagcggttgacatgctgctggataatgaagataaaatatcgatg
gacagagtggtggaggagctaaaggacagacctgaactgctgcatgtgtatctgcacaag
ctgtttaaacgagaccaccacaagggtcagaagtaccacgagagacagatcagtctgtac
gctgagtatgacaggcccaacctgctgcccttcctcagagatagcatccactgtccactg
gaaaaggccctggaaatctgtcagcagagacactatgtggaggagacggtctttttgctc
agtcggatggggaactgcagacgggcactacagatgatcatggaggagctgggagacgta
aaaaaagccatagagtttgccaaggaacaagatgatgctgaactgtgggaggatctcatc
tcttactccatagataaaccacctttcatcacagggttgctgaataacataggaacccat
gtggaccctatcctgctaatccaccgcatcaaagagggaatggaaatccccaatctcaga
gactccctggtcaaaatcctgcaggattacaatctacagatcttgttgcgagagggatgt
aagaagatcctggtagcagattcactctccctgctgcagaagatgcacagaacacaaatg
agaggagttcgggtggatgaggaaaatatctgtgaagcctgtcatgtgacaatactacca
tcagacacggcacaggcctttagcgtcgtggtgttccagtgcaggcacatgttccataaa
gagtgtctcccatcatcaggaacggtgccaggtgtgcagtactgcaacatctgtagtgcc
aagcggagaggccctggcagtggcatattagagatgaagaaatag
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