Trichomycterus rosablanca: 134301267
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Entry
134301267 CDS
T09921
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
134301267 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
trn03032
]
134301267 (topbp1)
03400 DNA repair and recombination proteins [BR:
trn03400
]
134301267 (topbp1)
DNA replication proteins [BR:
trn03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
134301267 (topbp1)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
134301267 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
ECT2_BRCT0
BRCT_TopB1_SLF1
Motif
Other DBs
NCBI-GeneID:
134301267
NCBI-ProteinID:
XP_062841967
LinkDB
All DBs
Position
23:7613608..7626780
Genome browser
AA seq
1520 aa
AA seq
DB search
MSKGSKDAYMVKFVEHNGEKSELGLKAYEAIVELQSEKYVQAINEDAALELDHNDKSLFV
FSDFTSDAFEHCRKLGCRVVSPLVVLFCLQQQRCVPKAVQPVYNMAMADVTVSCTSLDKE
ARTEVMDLVQLMGGRVYRDLNVSVTHLVAGEVGSKKYLVAASLGKPILLPTWVKACWEKS
QDSLFRHSDLRVEDYLCPVLKGCTVCVTGLSTVERKEVQRLCELHGGSYTGQLKMNECTH
LIVSEPSGQKYEFAKKWNVYCISIHWLFDSIEKGFCQDESRYAVERGGKAKENLGKPNTS
TPTGSSRRKEDGPSLLGLSHISNVSMDVNETAMTASTISRIEPADPIDAFDITVCPADDL
LDGCKLYLCGVVGKKLEKLRRLVNSTGGLRFNQLGEDLTHIVMGEPDQDVKNFLSKATHR
PHVVTVLWLLDSFSQGSLLPVENYFHQSFLPPAPAQVDIPAPRTAASRPSRPSIAPPPAP
SPNRHARAEEELLSQYMDNDQTVVEMPPVPDKNQTSISVLPEPVVPPGHDTTVAQDSEGG
MFTGKRFLLVGFGAEAEAQLSMLVVENNGRVLVGRFRGVADYAIVPLLGCEVEATVDEVA
TDSWLAMCVEQQCVLPLSSHPLFTPIVVKEGCSPLRDCVLSVSQFTGAERESLIQLARHL
GASVQDYFVRTANQRKGMLASTHLVLQTPEGTKYQAAKKWGLPAVTLRWVLESAKTGKRA
NEERFMVDLPPSPERTEDSFIGASQKTRTPPVPMRLSPELPLLGPQSSAAVTPLDTGRLQ
SRAVHSVLRKMKEGQEEQAVPTVQTQSEVKGGLQKEPSLQLDTPSRFLSRDRLFGPSFNI
KDVFDHLKTPGNKPQQNPGAETPLSEVIERNLKAAVANSNRSHAMSLAALTASPQLGNEP
EQKGAEKTPTPLSGVVVCVSKKLAKKQSELNATAASLGAEFRWSCDDSVTHYIYQGKVGD
NTKEYRAVKERGLHIVHQQWLQACAEEQRRVSDSLYPFTFNPKMSLTLSQVTDSIQKFPP
PSTPRTKLKALSEEEDTRMDTVDISANISTPRQVTGRESLGKEQQSSTERKDLTETLEMR
ESLQRQLQEIMSATKLTSGRRASSRLARMGSGGLDSPNTPESLGRMGRRSRTLEALRMSR
QVVMDINTEASQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSEPLTIPPPPHADQNVR
DSMTDSELVEMAACDVIEEQMKQKVTPPRVSAEPQDPKTPEPPSIAFPTSKPVVASVLQD
KEEKEPPRFQLSSLNPQERIDYSHLIEELGGVLLEKQCFDPSCSHIIVGYPLRNEKYLAA
MAAGKWILHRSYLEACRSEGHFIPEEHYEWGSRSILDALPSINSQQKRLAQAAQRWRKTL
QGCTDKEGAFGGWTVMLNIDQARDAGFRRLLQSGGAKVLPSPSPAFYRETTHLFADFSRL
GPNDARVDVAEAVAHGVKCLRPEYIADYLMQEPSPPMDAYYLPGAVQNGLPENIQHGQNT
PSRKRKASGDTSVLKKSRVR
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaggaagtaaagatgcgtacatggtaaaatttgttgaacacaatggagagaaa
agtgagcttgggcttaaggcttatgaggccattgtagaactacagtctgaaaaatatgtt
caggcgattaatgaggatgctgcactggagttggaccacaatgacaaatctttgtttgtg
tttagcgatttcactagtgatgcatttgagcactgcagaaagttgggctgcagggtagtg
agtcccctggtggtgctgttctgtctgcagcagcagcggtgtgtgcccaaagcagtgcag
ccagtctataacatggcaatggccgatgttacagtgtcctgcaccagtctggacaaagaa
gcacggactgaagtgatggacttggtgcagctgatgggtggcagggtctaccgagacctc
aatgtgtctgtcactcatctggtggcaggtgaggtgggcagtaaaaaatatctggtggca
gccagccttgggaagcctattctgctgcccacgtgggtcaaagcatgctgggagaaatct
caagacagtttattccggcactcagacctgcgtgtggaggactacctgtgccctgtgctg
aaaggttgcacagtatgtgtgactggtctctctacagtggagcgtaaggaggtgcagaga
ctgtgtgagctgcatggtggcagctatactggccagctcaaaatgaatgaatgcactcac
ctcattgtcagcgaaccctcaggtcagaagtatgagtttgcaaagaaatggaacgtctac
tgcatctctatacactggctctttgacagcattgaaaagggattttgtcaggatgagagt
cgctatgctgtggagcgagggggcaaggctaaagagaatcttggtaaacccaacacctct
acccccactggctcaagcaggagaaaggaagatggtccttcattgcttggattaagccat
atctcaaatgtcagtatggacgttaatgaaacagccatgactgcatcaacgataagccgc
atagagcctgcagatccaatcgatgcatttgatattacagtctgtccagcagatgattta
ttagatggctgtaagctctacctgtgtggtgtggtggggaagaagctggagaaactgcgt
cggttggtgaactctaccggaggtctgcgctttaaccagcttggtgaagaccttacacac
atcgtgatgggagaaccagaccaggatgtcaaaaactttctttctaaagccactcacagg
ccccatgttgtgacagttctctggttgctggacagcttctctcaaggctctctgctccca
gtggaaaattactttcaccagtcattcctccctcctgctccagcacaagtagacatccct
gcacctcgtactgccgcctctcgtccatccaggccctccatagcaccaccaccagccccc
agccctaaccgccatgccagggctgaggaagagttactctcacagtacatggataatgat
caaactgttgtggagatgcctcctgttccagataaaaaccagacaagcatttcagttctt
ccagagccagttgtacccccggggcatgacactacggtagcccaggactcggaaggtgga
atgtttacagggaaacgttttctcctggtgggctttggggcagaagcagaggcccagctt
tcgatgctggttgtggagaacaacgggagggttttggttggccgtttcagaggcgtggct
gattatgccattgttccattgttgggctgtgaggtagaagcaacggtggatgaggtggcc
acagactcttggctggccatgtgtgtggagcagcaatgtgttcttccactgtcatctcat
ccactcttcacccccatagtggtgaaagaaggctgctctcctctccgagactgtgtactg
tctgtcagccagtttactggagctgagagagagtcgctcatacagctcgccagacatctg
ggagcaagtgttcaggattattttgtgcgcactgcaaatcaaaggaagggcatgctggcc
agcactcacctggtcctccagactccagagggcaccaagtaccaggcagccaagaagtgg
gggctacctgccgtcaccctgcgctgggtcctagagtctgccaaaacaggcaaacgtgct
aatgaggagcggtttatggttgacctgccaccatcaccagagcgtaccgaggacagtttt
attggagcatctcagaagactcgaactccacctgtccccatgcgtctctctccagagctt
ccgctgctgggtcctcagagcagcgcagcggtcacaccgctggacacagggcgcctgcag
agccgcgctgtccactcagttctccgtaagatgaaggaagggcaggaagagcaggcagtg
ccaacagtacaaacccagagcgaggtcaaagggggcctgcagaaagagccgtctcttcag
ctcgacacaccatctcgcttcctcagcagagaccggctttttggcccttcctttaacatt
aaggatgtgttcgatcatttaaaaactcctggaaataagcctcagcagaacccgggggca
gagactcctttaagtgaggtcatcgaaagaaacttgaaagcagctgtggccaatagcaac
cgtagtcatgccatgagcctcgctgccctgactgcaagccctcagctgggcaatgagcct
gagcaaaagggggcagaaaaaactccaactcctttatctggagtggtggtgtgtgtgagc
aagaaactagccaagaaacagagtgagcttaatgcaacggctgcttccctgggagcggaa
ttcaggtggtcttgtgatgattcagtcacccattacatctaccagggtaaagtgggagac
aacaccaaagagtacagggcagtaaaagagagaggcctgcacatagttcaccagcagtgg
ctgcaagcgtgtgcagaggagcagagacgtgtgtccgattccctctatccttttaccttt
aaccccaaaatgagcttgacactgagtcaggtaacagacagcattcagaagtttcctcct
ccatccactccccgcaccaaacttaaagctctaagtgaggaagaagacactcggatggac
actgtggatatcagcgcaaacatttccactcctcgccaggtcactgggagagagtctttg
ggcaaagagcaacagagtagcactgaaagaaaagacttaacagagactctggagatgagg
gagagcttgcagaggcagctgcaagaaataatgtcagccaccaagctgaccagtggccga
agagcctcctctagattggctcggatgggctctggaggtctggactcgccaaacactcca
gagagtttgggtcgaatggggagacgcagcaggacgctggaagcactacgcatgtcccgt
caggtcgtaatggatataaacactgaggcatctcaaagcgaacaaatcgtatgggacgac
cccaccgccagagaggagagggcaaagctggctgataacctgcagtggccaggcagccct
tctcaacactcagaacctcttaccatcccacctccaccacatgctgatcagaatgtccga
gactccatgactgactctgaactggtggaaatggctgcctgtgatgtgattgaagagcaa
atgaaacaaaaggtgaccccaccaagggtcagtgcagaacctcaggaccccaaaactcct
gagccccccagtattgcttttcccacctcaaaacctgtggtggcatcagtgttacaggat
aaagaagagaaggagcctccacggttccaactgtcctccctcaacccacaagagcgtatt
gactacagtcacctcatagaagagctagggggtgtcctgctggaaaagcaatgtttcgac
cctagttgttcgcacatcatcgtgggttatccgctaagaaatgagaagtacctggcagcc
atggcagcgggaaaatggatccttcaccggtcgtacttggaggcctgtcgctctgaggga
cacttcataccggaggaacattatgaatggggaagccgctctatactggatgcgctccct
tccataaactcacagcagaaacgactggcacaagcagcccagcgctggagaaaaacactc
caaggatgcacagataaagagggagcgtttggtggctggacagtgatgctgaatatagac
caggccagagatgcaggattcagaagactgttgcagtctggaggagcaaaggtattgcca
agcccctctcccgcattctatagggaaaccactcatctcttcgcagacttcagccgactg
ggaccaaatgatgccagagtggacgtagcggaggctgtggctcatggagtcaaatgccta
aggcctgaatacattgcagactatctaatgcaggagccctcaccaccaatggacgcatac
taccttccaggagcagtgcagaacgggcttcctgaaaatatacagcatggacaaaataca
ccgtcccgcaagcgcaaggcctcgggggacacgtcggtgcttaaaaaaagcagagttagg
tga
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integrated database retrieval system
