Trichomycterus rosablanca: 134301574
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Entry
134301574 CDS
T09921
Symbol
rbm39a
Name
(RefSeq) RNA-binding protein 39a isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
trn03041
]
134301574 (rbm39a)
Spliceosome [BR:
trn03041
]
Common components
Common spliceosomal components
General mRNP proteins
134301574 (rbm39a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RBD_DEAH11
RSRP
RRM_7
RRM_5
CDC45
Motif
Other DBs
NCBI-GeneID:
134301574
NCBI-ProteinID:
XP_062842409
LinkDB
All DBs
Position
24:complement(7666631..7676818)
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AA seq
541 aa
AA seq
DB search
MQIHSIMADDFDIEAMLEAPFKKDENKSLSSNGHEERSKMKKKSRSRSRDRDHKNSRSRD
KKRSRSRERKRSRSRDKKRSKSRDRKRSRSRDKHRSRSRSKERGGRFRTGFSGVKFNGGS
RGKTGPPPVIKQQSNKKSESPSPFKRDKSPIRLPADNLTPEERDARTVFCMQLAARIRPR
DLEEFFSAVGRVRDVRIISDRNSRRSKGIAYIEFVNTTSVPLAIGLSGQRLLGVPIIVQA
SQAEKNRAAAALANNLQKGNAGPMRLYIGSLHFNITEDMLRGIFEPFGRIDSIQLMTDSE
TMRSKGYGFITFTDSESAKKALEQLNGFELAGRPMKVGHVTERTDASMASSFLDNDELER
TGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMTNTMVAMAAATAAMNPGLSFNLGVP
PNQPLNLPSQPIATHCFQLSNMFDPNSENDPGWDVEIQDDVIEECNKHGGVIHIYVDKKS
AEGNVYVKCPTIPAAMAAVSALHGRWFGGKMIKAAYVPLPTYHNLFPESVQGTQLLMPTR
R
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgcagatccacagcatcatggccgacgactttgacatcgaggcaatgctcgaggcgccc
ttcaaaaaggatgagaacaagtccttaagttccaatggccatgaggagagaagcaagatg
aaaaagaagagcaggagtcgtagcagagatcgggaccacaagaacagtcgaagccgggac
aaaaagagaagccggagcagagagcgaaaaaggagcaggagccgagacaagaagcgcagc
aagagcagagaccggaagcgcagccggagcagggacaagcaccgcagccgctccagaagc
aaggagcgtggaggacgctttcgaacaggcttttctggcgtgaaatttaatggtggttca
agggggaagactggcccaccacctgtcatcaaacaacaaagcaacaaaaaatctgagagt
ccaagtcctttcaagcgagacaagagtcctatcagactgcctgcagataatcttacacca
gaagagcgggacgcacgcacagtgttttgcatgcaacttgctgccagaattcggcccaga
gacctggaggagtttttctctgctgttggaagagtgagagatgtgagaataatctctgat
agaaactctagaagatctaaaggaatcgcctacatcgaatttgtaaacaccacctctgtt
cctctggcaattggtctgtctggacaaagactgctaggagtaccgatcatcgtccaggct
tcacaggctgaaaagaacagagcagcagctgcattagccaacaatttgcaaaaaggcaat
gccggacccatgagactttatatcggctcactgcattttaacatcacagaggacatgctc
agagggatctttgaaccgttcggacggatcgacagcattcagctcatgacggacagtgag
acaatgaggtccaagggatacggattcatcacatttactgattcggagtccgctaagaaa
gccttggagcagctcaacggtttcgagctggcaggcaggccaatgaaagtgggccatgtg
accgagaggacagatgcctccatggccagctctttcctagacaacgacgaactcgaaaga
accggcatcgacctgggcaccaccggtaggctgcagctcatggcaaggctggctgaaggt
actggccttcagattcctccagccgcgcagcaagctctgcagatgactaatacaatggtg
gcaatggcagcagctaccgctgctatgaatcctggattgagtttcaacctcggcgtcccc
ccgaaccaaccattaaatctgccatcacaacccatcgcaacgcactgctttcagctttcc
aacatgttcgatcccaattcggaaaacgatcccgggtgggatgttgaaatccaagatgat
gtaattgaggaatgtaacaagcatggcggagttatccacatatacgtggataagaagtct
gctgagggaaatgtgtatgtgaagtgtccaaccatcccagccgcaatggctgctgttagt
gcgttacatggacgttggtttggaggtaaaatgatcaaagctgcatatgttcctctgcca
acataccacaatcttttcccagagtccgtgcaaggcacacaacttcttatgcccactcgc
cggtga
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integrated database retrieval system
