Trichomycterus rosablanca: 134301717
Help
Entry
134301717 CDS
T09921
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
trn
Trichomycterus rosablanca
Pathway
trn04510
Focal adhesion
trn04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
134301717 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134301717 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
trn00536
]
134301717 (col2a1b)
Glycosaminoglycan binding proteins [BR:
trn00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
134301717 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
134301717
NCBI-ProteinID:
XP_062842625
LinkDB
All DBs
Position
24:complement(7603130..7652071)
Genome browser
AA seq
1489 aa
AA seq
DB search
MPRYLDSKTVLIYVATLILVLANVNGQDEDDLEPGSCTHDGQHYSDKNVWKPEPCRICVC
DTGTVLCDEIVCEKLKDCPKPEIPFGECCPICAAEQPAAGEVPGVKGQKGEPGDVTEVVG
PRGQLGPMGPPGEQGPRGRRGEKGEKGTLGPRGGDGEPGIPGNPGPPGPSGNNVMSGQGG
NFASHMAGGFDDKTGAQMGMMQGPMGPMGQRGPPGPTGAPGPHGFQGNPGESGEPGGSGH
MGPRGPPGSPGKPGDDGEPGKPGNSGERGAAGPQGTRGFPGTPGLPGIKGHRGFSGLSGA
KGEVGAAGAKGEAGSTGETGAPGPMGPRGLPGERGRPGPSGPIGARGNDGVSGPAGPSGP
LGPSGTPGFPGLPGAKGEAGPTGARGPEGAQGPRGETGLPGFSGPGGAPGNSGADGNPGA
KGSAGASGIAGGPGFPGPRGPPGPQGATGPLGPKGQSGDSGIAGFKGEAGPKGEIGRGGS
QGLLGPSGEEGKRGLRGDPGAAGPIGPTGERGAPGNRGFPGQDGLAGPKGSPGERGPPGV
LGPKGAIGDPGRPGEPGLPGARGLTGRTGDAGPQGKVGPSGAPGEDGRSGSSGPQGARGQ
PGTMGIPGPKGASGEPGKPGEKGLAGALGLRGMPGKDGETGASGPPGPAGSAGDRGEQGQ
PGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGTAGPTGPRGERGFPGERGGAGPQGLQGT
RGLPGTPGTDGLKGAVGPAGAAGSQGPPGLQGMPGERGPSGVSGPKGDKGDTGEKGIEGA
PGKDGLRGLTGSIGPTGPAGPNGEKGESGPAGPRGPVGTRGGHGDRGDTGPTGPVGFSGP
PGVDGQSGSKGDPGEGGQKGDAGSAGPQGLSGAPGPQGPTGVSGPKGARGAQGPPGATGF
PGAAGRVGPPGPNGNPGTAGPAGTPGKDGPKGVRGDAGPTGRQGDAGLRGSAGPNGEKGE
AGEDGPPGPDGPAGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGTPGGPGDRGP
PGPVGAPGQTGPIGEPGREGNPGTDGPPGRDGAAGIKGDRGANGPSGAPGAPGAPGASGP
VGPTGKQGNRGEAGPKGPAGSSGPAGARGMPGPQGPRGDKGEDGDIGERGQKGHRGFTGL
QGLPGAPGQVGDQGASGPAGPSGARGLPGPVGPAGKDGAVGLPGPIGPPGPRGRSGESGP
AGLPGTPGPPGPPGQPGPSIDMSAFSGLSHPDSAADPLIYMRADQAAEGPQQDDTEVDAT
LKSLNSQIENIRSPDGSRKNPARTCKDLKQCQPGWKSGEYWIDPNQGSPVDAIKVHCNME
TGETCILPRPDKIPRKKWWSSKSGTRKHIWFGESMNGGFRFSYGEHTLARNTASIQMTFL
RLLSTEASQNITYHCKNSVAYMDGTAGNLKKALLLHGSDNVEISAEGNRRFTYSVLEDGC
TRYTGQWGRTVIEYKSQKTSRLPIVDIAPIDIGGDNQEFGVDVGAVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgccccgctatctggattcaaagactgtattaatctatgtggcaacattaattctagtt
ttagcaaatgttaatggtcaagacgaagatgatctggaaccaggtagctgtacacatgat
ggccagcactacagtgataaaaacgtgtggaaacctgagccgtgtcggatctgcgtttgt
gataccggcacggtcctctgcgatgagatagtctgtgagaagctgaaggactgccccaaa
cccgagataccatttggagagtgttgccccatctgtgctgccgaacaacctgccgctggt
gaggtgccaggtgttaaggggcagaagggtgaaccaggagatgttacagaagttgttgga
ccaagaggacagctaggtccaatgggacccccaggagagcagggaccacgtggaaggaga
ggagaaaaaggagagaaaggaacccttggcccccgtggcggtgatggcgagcctggcata
cctggaaaccctgggccgcctggaccgtctggaaataatgttatgtctggccagggtgga
aactttgcatctcatatggccggtggatttgatgacaaaactggtgcacagatgggtatg
atgcaaggaccaatgggtcctatggggcagagaggaccacctgggcccactggagcacct
ggcccacatggtttccaaggcaatcctggagagagtggagagccagggggtagcggccat
atgggtccacgtggtcctcctggatctcctggcaaacctggagatgatggtgaacctggc
aagcctggtaattctggggaacgtggcgctgctggaccacagggaactcgaggatttcca
ggtactcctggtctgcctggaatcaaaggacacagaggcttttcaggtcttagtggggca
aaaggtgaagttggagctgccggagctaagggtgaggctggttctactggtgaaactggc
gctcctggaccaatgggtccacgtggtcttccaggagaaagaggacggccaggaccttca
ggacccataggtgctcgtggaaatgatggtgtgtctggtcctgctggtccttcaggtcct
cttggaccttctggaactccaggttttcccggtcttccaggcgctaagggtgaagctggc
cccactggagccagaggacccgagggagctcagggaccccgtggagaaactggcttgcct
ggattttctggccctggtggagcccctggcaattctggtgcagacggtaatcctggagct
aaaggatctgcgggagcgtctggtattgctggaggtcctggttttccaggcccccgtggg
cctcctggacctcaaggagcaacaggacctcttggaccaaaagggcagtctggtgattct
ggcattgcagggttcaagggtgaagcaggccccaagggtgaaataggtcgtggtggttct
caaggtcttcttggcccttccggagaggagggtaaacgaggcctcagaggagatcctggt
gctgctggacccatcggacccactggagagagaggtgctcctggtaaccgtggtttccca
gggcaggatggtttggcaggtcctaagggcagtccgggtgagcgtggaccccccggagtt
ctagggcctaagggcgccatcggtgatcctggtcgacctggcgagcctggtcttcctggt
gctcgaggtctgactggacgcactggtgacgctgggccacagggcaaagttggtccatct
ggagcacccggtgaagacggtcgttccggctcttctggccctcagggggctcgtggtcag
cctggaacaatgggaatccctggacccaagggtgccagtggtgaacctggtaaacctggt
gagaaaggccttgctggtgctcttggtctacgggggatgcctgggaaagacggtgaaaca
ggtgcttcgggacctcctggccctgccggctctgctggagacagaggagaacaaggtcaa
cctgggccttctggtttccaaggtttgccagggcctccaggacctccgggtgaggggggt
aaacctggtgatcagggagtcccaggagagggtggtactgcaggcccaactggacccagg
ggtgagcgaggctttccaggagagagaggaggtgctgggccccagggtcttcagggaaca
cgtggtcttcctggaactccaggaactgatgggctcaagggagcagttggccctgctgga
gccgctggttctcagggccctcctggtctacaaggaatgccaggtgaaagaggaccttcc
ggtgtttcaggacctaaaggtgacaaaggagacactggtgaaaaaggaattgagggcgct
cctggcaaagacggcctacgagggttaactggctcaattggtcctactggtcctgctggt
cctaatggggagaagggagagtctggtcctgctggacctcgtggacctgtcggtactcgt
ggtggtcatggtgacaggggtgatactggccctactggccctgttggtttttctggtcct
cctggagtagatggtcagtctggttctaagggagacccaggagaaggtggacagaaaggt
gacgcagggtctgctggtcctcaggggctgtctggggcaccgggacctcagggaccgact
ggcgtttccgggcctaaaggtgctcgtggagctcagggacctcctggtgcgactggtttt
cctggagctgctggcagagttgggccacctggtcctaatggtaatcctggtactgccggc
cctgctggtacccccggaaaggatggtcccaaaggtgttcgtggtgacgccggccccaca
ggcagacagggtgatgcgggtttgcggggttcagctggtcctaatggtgagaagggagag
gcaggcgaggatggtcctcctggtccagatggtccagcaggtcctcagggtcttgctgga
caacgtggtattgttggtcttccaggacaacgtggtgaaagaggctttcctggtctgcca
ggaccttctggtgaacctggtaagcaaggaactcccggtggacctggagaccgtgggcct
cctggccctgtaggagctcctggacagactggacccattggagagcctggtagagagggt
aaccctggcactgacggtcctccaggccgagatggtgccgcaggaataaagggtgatcga
ggtgcaaatggcccatctggggctcctggtgcacctggggctcctggtgcttctgggcca
gttggtcccactggtaaacaggggaacagaggagaagctggacccaagggaccggctgga
tcatctggacctgctggagctagaggaatgcctgggccccaaggaccccgtggagataaa
ggagaggatggcgatattggagaaagaggacaaaaaggtcatagaggatttacaggtctt
cagggtctacctggggctccgggtcaagttggtgaccaaggtgcttctggacctgctggc
ccaagtggcgcaagaggactccctggccctgttggtccggctggaaaggatggagctgtt
ggccttcctggcccaatcggacctcctggcccacgtggccgttctggggaaagtggacca
gctggactaccggggacccctggacctccaggacctcctggtcaacctggacctagcata
gacatgtccgccttctctggtctgtctcacccggacagcgccgctgaccctctgatctac
atgagagctgaccaggccgcggaagggccccagcaggacgatacagaagtagatgccacc
ctcaagtctctgaatagccaaattgagaacatccgcagccctgacggttctaggaagaat
cctgctcgtacctgcaaggacctgaaacagtgccagcctggctggaaaagtggagagtat
tggatcgatcctaaccaaggctccccggtcgatgccatcaaggttcactgcaacatggaa
accggggagacttgcatccttccaagaccagataaaattcctcgcaaaaaatggtggagc
agcaagagtggtactcgtaaacacatctggtttggagaatcaatgaacggtggattccgt
ttcagctatggcgagcacactcttgcacgtaacacggcgagcatccagatgactttcttg
aggctgctgtctaccgaagcttcacagaatattacataccactgcaagaacagcgtggcg
tacatggacgggactgcagggaacttaaagaaggctctgcttctgcacggctctgataat
gtggagatcagtgctgaaggcaatagacgctttacatatagtgtgctagaggatggctgt
acgaggtacacgggacagtggggaaggacagtaattgagtacaagtcacagaaaacatct
cgtctgcccattgtggacatagcccctatagacatcggtggagacaatcaagagtttgga
gttgatgttggtgcagtctgtttcttataa
DBGET
integrated database retrieval system
