Trichomycterus rosablanca: 134301730
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Entry
134301730 CDS
T09921
Name
(RefSeq) transcription factor SOX-13-like
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
trn03000
]
134301730
Transcription factors [BR:
trn03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
134301730
BRITE hierarchy
Motif
Pfam:
HMG_box
HMG_box_2
COG3_N
Motif
Other DBs
NCBI-GeneID:
134301730
NCBI-ProteinID:
XP_062842641
LinkDB
All DBs
Position
24:complement(5863274..5903679)
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AA seq
605 aa
AA seq
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MCEPSSPVLQPNASGNVSKVGVGVKLEEVSGDTGGVRDSQHSSPSYDWSARMHTERADPE
KSTIRIQQSPLASSPIKEQMHRFSPASQDELKRTHDKPETQSNVSEVLPTIEKLLNSDWR
EKILGKGFQSTANLKSTPESLAEKEFQLLLMINQLSGLREQLLGAHSEQRNMAALLLEKQ
QQQMELARQQQEQIAKQQQQLIQQQHKINLLQQQIQVNLPYVMIPAFHPNTQTLPDTQMG
LPLQPIPCKPVEYPMQLLQNPHSNPLKRPSGTGVRQDINQPLNLTAKPKTPSPLSLELAS
AHLQSTYRMRELQHSPTRTALGLGFLGEGDIVSQTIHDAQQLLRGGQGLASREREGSTRL
SEYKEVSRTDRMLHNNRTDDGQSIRTNDEHLSSDSEGPIAGMGGYGDSRTTSSGHIKRPM
NAFMVWAKDERRRILQAFPDMHNSSISKILGSRWKSMSNQEKQPYYEEQARLSRQHLERY
PDYKYKPRPKRTCIVEGRRLRVGEYKAMMKNRRQEQRSSYPPSQSEQQLHYPSAEAQYPS
KPVAMALPLHPSLLEHYLPRSIDPPQPPRAPEESDRPGANKTPYSEGEESDAGERSEGEL
VVLTD
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgtgtgagcccagctctcccgtgctacaacccaacgccagtggcaatgtatccaaggtg
ggagtcggtgtcaagttggaagaggtgtctggagacacaggcggagtcagggactcccaa
cactcctcaccttcctatgattggtcagcgcggatgcacacagaacgggccgatcctgaa
aagtccacaattcgcatccagcagtctcctttggccagttctcccattaaagagcagatg
cacaggttcagtcctgccagtcaggatgagctgaaaaggacccatgataaacctgaaacc
caatcgaatgtcagcgaggtgctgcccaccattgagaaactcctgaattcagactggaga
gagaagattttgggcaaaggattccaaagcactgccaacttgaaaagcacaccggagagc
ttggctgagaaggagtttcagctgttactgatgattaaccagttgtccggcttaagggag
cagttgctgggagcacactcggagcagaggaacatggcggccctgctcctggagaaacag
cagcagcagatggaactggcacgccagcaacaggaacagattgctaagcagcagcagcag
ttaatccaacagcagcataagatcaacttgctgcaacagcagattcaggtgaacctgccc
tatgtgatgatcccagctttccaccccaacacccagacattaccagatacacagatgggt
ctgccgcttcagcccattccctgcaaacctgtggaataccccatgcagcttctccagaac
cctcactccaaccctctgaaaagaccaagtggtacaggagttcggcaggacatcaatcag
cctctgaacctgacagccaaaccgaaaaccccgagcccgctgagtctggaactggcatcc
gcccacctgcagtccacctacaggatgagggagctacagcacagcccaactagaactgca
cttggcctgggcttcttgggagagggtgatatcgtgagccagaccatccacgatgcccag
cagctgttgcgcggaggccaaggtctggcgagccgagaaagagagggcagcacgaggctg
agcgagtacaaggaagtctccagaactgaccgcatgctccacaataatcgcacggatgac
ggacagtccatacggacgaacgatgagcatcttagcagtgactctgaggggccgatcgct
ggcatggggggctacggtgacagtcggacgacgtcgtctggccatataaagcgaccaatg
aacgcctttatggtgtgggcgaaagacgaacggaggcgcatcctacaggcctttccggac
atgcataactcgagcatcagcaagattctgggctcacgctggaagtccatgtccaaccag
gagaagcagccatactatgaggagcaggcccggctgagccggcagcacctggagcgctac
ccagactacaagtacaagccccgaccaaagcgcacatgcatcgtggagggccggcgcctg
cgcgtgggcgagtataaagctatgatgaaaaaccggaggcaagagcagcggtcctcgtac
ccacccagccaatcagagcagcagctgcactacccatcagcagaggctcagtaccccagc
aagcctgtcgccatggccctgccattgcacccttccttgctggagcactacctcccccgt
tccatagacccacctcaacccccacgagctcctgaggagtccgacaggcccggtgccaac
aaaacaccgtacagcgagggtgaggagagtgatgcaggagagcgcagcgagggagagctg
gtggtccttacagactga
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