Trichomycterus rosablanca: 134302571
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Entry
134302571 CDS
T09921
Symbol
zgc:110269
Name
(RefSeq) probable flap endonuclease 1 homolog
KO
K04799
flap endonuclease-1 [EC:3.1.-.-]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03030
DNA replication
trn03410
Base excision repair
trn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
134302571 (zgc:110269)
03410 Base excision repair
134302571 (zgc:110269)
03450 Non-homologous end-joining
134302571 (zgc:110269)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
trn03032
]
134302571 (zgc:110269)
03400 DNA repair and recombination proteins [BR:
trn03400
]
134302571 (zgc:110269)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
trn04147
]
134302571 (zgc:110269)
DNA replication proteins [BR:
trn03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
134302571 (zgc:110269)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
134302571 (zgc:110269)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
134302571 (zgc:110269)
Exosome [BR:
trn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
134302571 (zgc:110269)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPG_I
XPG_N
XPG_I_2
5_3_exonuc
Phage_gp38
Motif
Other DBs
NCBI-GeneID:
134302571
NCBI-ProteinID:
XP_062843785
LinkDB
All DBs
Position
25:18737963..18742238
Genome browser
AA seq
345 aa
AA seq
DB search
MGITKLAELIRNDAQGSVSYKEIGDYTGKIIALDTSIVMNQFRTAVPNLKLSLQGLLYRT
LTFLEHDIKPLFVFDGKPPEQKRAVLEKRAQNAGWKSSHRSNAVSAQTLDVLRLLQLLGV
PCVTAPGDAEAFCAHLVKSGLVDAVASEDMDTLAFGGTVLLRQLKASKSSEVTEYSLPKL
LDALQLSQKEFVDLCILLGCDYCEKIGGLGPSRALKLIQKHRTIENVVLNINRKTHPVPV
SWQYQAARRLFLQTLESDPPCLQWKEPDEEKLVNFLCKEKHLRVEKVRGRMEKFRQNLTR
RREAREEERVERRQTSIKEFFPLTRKRQSADSDPGSSNRKRPKSK
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgggaattactaaactagcagaattgattcgtaatgatgctcaaggatcggtatcttac
aaagagatcggcgattatactgggaaaataattgctctcgatacgtccattgtgatgaac
cagtttcgtacggctgttcccaatctaaaactcagtctccaaggcctgttgtaccgcaca
cttacattcctggagcacgacatcaagccgctgtttgtgtttgatggaaaacctccagaa
cagaagagagcggtgctggagaaaagagctcagaacgcaggatggaagagctcacatcgc
tcaaacgctgtttccgcccagaccctggacgtccttcgtctcctccaacttctaggtgtt
ccttgtgtcacggctccaggagacgcggaggcgttttgtgcccacctggttaaaagtggt
ctggttgatgctgtggcatcagaggacatggacaccctggcgttcgggggaactgttctc
cttcgccagctgaaagcaagcaaatccagtgaggtgaccgagtactccttaccaaaatta
ctggacgctctacagctctcgcagaaggagtttgtagatctgtgtatattactggggtgt
gattactgtgagaaaataggcggtctgggtcccagtcgagcgctgaagctgattcagaaa
catcgaaccatagagaacgtggtgctcaacatcaacaggaagactcacccggttccggtg
agttggcagtaccaggctgcacgccggctgtttttgcagactcttgagtccgaccccccg
tgtctccagtggaaggaacccgacgaggaaaagctggtgaacttcctgtgtaaggagaaa
cacctcagggtggagaaggttcgagggcggatggagaagtttcggcagaatctcaccagg
agaagagaagcgagagaggaggagagagtggaacggagacagaccagcatcaaggaattc
tttcctctaacacggaaaagacagtctgcagattctgatccaggatccagtaacagaaaa
cgtccaaaatctaaatga
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