Trichomycterus rosablanca: 134302574
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Entry
134302574 CDS
T09921
Symbol
shhb
Name
(RefSeq) tiggy-winkle hedgehog protein
KO
K11988
sonic hedgehog
Organism
trn
Trichomycterus rosablanca
Pathway
trn04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
134302574 (shhb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
trn01002
]
134302574 (shhb)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
trn00536
]
134302574 (shhb)
Peptidases and inhibitors [BR:
trn01002
]
Cysteine peptidases
Family C46: hedgehog family
134302574 (shhb)
Glycosaminoglycan binding proteins [BR:
trn00536
]
Heparan sulfate / Heparin
Morphogens
134302574 (shhb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Hom_end_hint
Peptidase_M15_3
Hint_2
DUF7764
SH3_12
Vint
Motif
Other DBs
NCBI-GeneID:
134302574
NCBI-ProteinID:
XP_062843787
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All DBs
Position
25:603100..608263
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AA seq
422 aa
AA seq
DB search
MDLVLLLRRLALVSSVCLLLGAAATRACGPGRGYGKRRHPKRLTPLAYKQFIPNVAEKTL
GASGKYEGKITRNSERFKELAPNYNPDIIFKDEENTGADRLMTQRCKDKLNSLAISVMNQ
WPGVKLRVTEAWDEDGNHFEESLHYEGRAVDITTSDRDKSKYGMLSRLAVEAGFDWVYYE
SKAHIHCSVKAENSVAVKSGGCFPASASVLLADGSRKRVEDLKVGDRVLAADEDGNAVYS
DFIAFLDRDASVRRTFLVLETSEPGVALMLTPAHLVFVRDDSAASGMLAKFASSVRPGQE
VFVSEGGRGRLRAALVERVRTVEDGGSYAPLTAHGTVVVDGVLASCYAAVEEQRWAHWAF
APLRMRHAVTASTWWRWIVPDVSLNVTLEQDGVHWYPRMLLHVGPWLLDRDSFHPLGISS
TS
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atggacctggtgctgctgctcaggaggctcgcgctcgtctcgtccgtctgcctcctgctc
ggcgcggcggccacgcgcgcgtgtggtccgggtcgcggttacggcaagcgcaggcacccg
aagaggctcaccccgctggcgtacaagcagttcatccccaacgtggcggagaagacgctg
ggcgccagcggcaagtacgagggcaagatcacgcgcaactcggagcgcttcaaggagctc
gcgcccaactacaaccccgacatcatcttcaaggacgaggagaacaccggggccgaccgc
ctcatgacccagcgatgtaaagacaagctgaactcgttggccatctcggtgatgaaccag
tggccgggggtgaaactgcgcgtcaccgaggcctgggacgaggacggcaaccatttcgag
gagtctctgcactacgagggccgggcggtggacatcaccacctcggacagagacaagagc
aagtacgggatgctgtccaggctcgccgtggaggccgggttcgactgggtctactacgaa
tccaaagcccacatccactgttctgttaaagcagagaactctgtggcggttaaatccggc
ggctgttttcccgcctctgcttcggttctcctggctgatgggagcaggaagcgggtggag
gatctgaaggtgggcgacagggtgctggcggcggacgaggacgggaacgccgtgtacagc
gacttcatcgcgttcctggaccgagacgcgagcgttcgtcggacgtttctggtcctggag
acgtcggagccgggcgtggccctcatgctcacgccagcgcacctggttttcgtccgggac
gattcggccgcctcggggatgctggcgaagtttgcgagcagtgtgagacccggtcaggag
gtgttcgtttcggagggggggcgtggacgcctgcgggcggcgctcgtggagcgggttcgt
acggtggaggacggcggatcgtacgcgccgctcacggcacacgggacggtggtggtggac
ggggtgctggcgtcgtgctacgcggccgtagaggagcagcgctgggcgcactgggcgttc
gcgccgctcaggatgcgccatgcggtcacggcgtccacatggtggcgctggatcgttccg
gatgtcagtctgaacgtcacgctggagcaggacggggtgcactggtacccccggatgctg
ctgcacgtcgggccgtggctgctggaccgggactcgtttcatccgctcgggatctccagc
accagctga
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integrated database retrieval system
