Trichomycterus rosablanca: 134303531
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Entry
134303531 CDS
T09921
Symbol
zc3h12b
Name
(RefSeq) probable ribonuclease ZC3H12B
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134303531 (zc3h12b)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
134303531 (zc3h12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
KH_N4BP1_1st
UBA_N4BP1_C
zf-CCCH_2
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
134303531
NCBI-ProteinID:
XP_062845034
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All DBs
Position
26:complement(781573..790442)
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AA seq
971 aa
AA seq
DB search
MVLELAAPASAGPLLQRSIPHIERLFRVRVSCSAADTHTHSHSHSHLNTHTGTDSDTSSD
TDSGRRSVIVIIQDGTEEDCSRAKDYIVSLIAPVQRHHERLTLRHQRLYEPESTEARENA
PELMEDDEGEEEGSSSESEGERRSAGRGRAGGRRRTELSMVTKPHRQLCRSPCLDRPSFS
QSSTLQELRVDDTLAPTSSSSLAPPATFVGHAPADRDYQSKMEFALKLGYSGEQVEAVLS
KLGPSALTNDVLAELVRLGNKGEIEPQAQTPGGLTSAGLNLAPRGSGAKEGVSPEASLEE
ETTDTYDNLRPIVIDGSNVAMSHGNKEVFSCLGIQLAVDWFLERGHKDITVFVPAWRKEQ
SRPDAPITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLACDSDGVIVSNDNY
RDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPVVPEHKKQPC
PYGKKCTYGHKCKYYHPERATQPVRSVADELRAFAKLSAVKTMSEGALVKCGISSTSAKG
DGSEAKRVAPKRQSDPSIRSVGCEQEERLCLARKAEASSVPSLVTALSVPTMPPTKSHAA
GALNTRSASSPVPGSLHFTHSSLEHAGSIQYPPILVTNSQGASVAYSEPFPKYDSIVSDH
GYYSMLSDFSTMSLGSMQDSFCSLEQPDPVGVGGGYTVRTSGICPETGRSHSSDSYSSYS
GEMYSMEGSMDDGMKVPPSAQSQAQSQAQSRLQAFAHGFHHEALTRVQSYGTDEPKPCPR
KQSSAHLVPHVQHPVVGARSSCPGDYPPLPQNVMPSSGPVQQSRSLGMTRMDSISDSRLY
ESNPLRQRRPPLCREQHASWDPLPCGNEPYGYGGYGLVGGLMPCCERVMVRSMPEKMEQI
WRSPWDMPHGPHGPMEPQERHPIPEHLYQTYRNLCNIFPAYVVHSVMEKNPHMTDPQQLA
AVIVTKLRSCH
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atggttttggagctggcagcgcccgcaagtgcaggcccgctgctgcagcgctccatcccg
cacatcgagcgcctgtttcgggtcagggtgagctgcagcgccgctgacacccacacccac
tcccactcccactcccacctgaacacccacaccgggaccgacagcgataccagcagcgat
accgacagcggccgccgctccgtgatcgtgatcatccaggatggcacggaggaagactgc
agcagggctaaagactacatcgtgtctctgatcgctccggttcagagacaccatgagcgc
ttgaccctgcggcaccagcgcctgtacgagccggagagcaccgaggcccgagagaatgcg
cccgagctgatggaggacgacgaaggagaggaggaagggagcagctcggagagtgaagga
gagagacggagcgccgggcgaggaagagccggaggaagaagaagaaccgagctgagcatg
gtgaccaagcctcaccgtcagctgtgccgctctccgtgtctggaccgccccagtttcagc
cagagcagcacgctacaggaactacgcgtcgacgacaccctggctcctacctcgtcctcg
tctctggcgccgcccgccactttcgtagggcacgcccctgccgatcgcgactaccagagc
aaaatggagttcgcgctgaagttagggtactcgggcgagcaggtggaggccgtgctgagc
aaactgggacccagcgctcttaccaacgacgtcctggctgaactggtgcgactcggaaac
aaaggagaaatcgaaccgcaggcgcagacgccgggcggattaacatcggccgggttaaac
ctagcgcctcgtggctctggggcaaaagagggcgtgagtcccgaggcctcgctcgaggag
gagaccacggacacgtacgacaacctccgacccatcgttatagacggatccaacgtggcc
atgagccatggaaacaaagaggttttctcttgcctgggcatccagctggcagtcgactgg
ttcctggaacgcgggcataaagatatcacggtgttcgtaccagcgtggaggaaagagcag
tccagacccgatgctcccataacagatcaggagatcctgagaaagctggagaaggagaaa
atcctggtgttcaccccatcacgtcgggtccaggggcgacgggtcgtctgttacgacgac
cgcttcatcgtcaagttggcgtgcgactcggatggcgtcatcgtatccaacgacaactac
cgagacctgcaaaacgagaagccggagtggaagaagttcatagaggagcggctgctcatg
tacagcttcgtcaacgacaagttcatgccccctgatgacccacttggcaggcacggtcca
agtctggaaaacttcctccgcaagagacctgttgtcccggaacacaaaaagcaaccgtgt
ccttatggtaagaagtgcacatacgggcacaagtgtaagtattaccacccggagagggcg
acgcagccggtccgatctgtagcggacgaactcagagcgttcgccaagctgtctgcggtg
aaaaccatgagcgaaggtgctcttgttaaatgcggtatatctagtacctcggcgaaaggg
gacggttctgaagcgaagcgagtggcgccgaaacgccagtcggatccgagcatccggtca
gtggggtgcgagcaagaagagcggctctgtctggctcggaaagccgaagcgagctcggtt
ccgtctttggtgacggctcttagcgtcccgaccatgccgcccaccaagagtcacgcggcc
ggtgcgttgaatactcggtcggcgagtagcccagtaccagggtcgctccactttactcac
agctcgctagaacacgccggaagcatccagtaccctccgatcctggtcaccaacagccag
ggtgcgtccgtggcatacagtgaacctttcccgaaatacgattcaatcgtcagtgaccac
ggctactactccatgctgagcgatttctccaccatgagtttgggaagcatgcaagacagc
ttctgcagcctggagcaaccggatccggtcggagtcggcggagggtacaccgtacggaca
tccgggatctgtcccgaaaccggacgcagtcactcttcagactcgtactcctcctacagc
ggagagatgtactccatggagggcagcatggacgacggtatgaaggtcccaccttctgca
caatctcaagcgcaatcccaagcacagtcacgtctacaagcgtttgctcacggtttccat
cacgaggctttaaccagagtccagagttacggcacggacgagcccaaaccgtgcccacgc
aagcagtcctcggcccacctcgtgcctcacgtgcagcatcctgtcgtaggcgctcgatca
agctgcccgggtgactaccccccactcccacagaacgtgatgccttcgtccggcccagtt
cagcagagcagatccttggggatgacccgaatggacagcatttcggactcccggctctat
gaaagtaacccgctccgacagcgcaggcctcccctgtgtcgggagcaacacgccagctgg
gatcctctgccctgcgggaacgaaccctacggttacggaggttacggattagtgggaggc
ctcatgccatgctgcgagcgggtcatggtccgaagcatgccggaaaagatggagcagatt
tggaggtctccgtgggacatgcctcatggacctcacggaccgatggaaccgcaggaacgt
catccgatccctgagcatctgtaccagacttaccggaacctctgcaatatattcccagcg
tacgtagttcactcggtcatggagaagaaccctcatatgacggatcctcagcaactagcc
gccgtcatcgtaactaaactacggtcctgtcactga
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