Trichomycterus rosablanca: 134303950
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Entry
134303950 CDS
T09921
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
trn03036
]
134303950 (chd9)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
134303950 (chd9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
BRK
Helicase_C
Chromo
ResIII
DEAD
HTH_Hrp3
HDA2-3
DUF5994
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
134303950
NCBI-ProteinID:
XP_062845510
LinkDB
All DBs
Position
27:15125079..15180296
Genome browser
AA seq
2806 aa
AA seq
DB search
MDYFGDPNLFEGLDQDCFSSGSVSLADELDLGSGLEPLQMNPPGPEKHANQHGVNFCQQL
GPFDGMKVQTGMAQAYSAPGGAFDSRRTQFQDPNPNRAPHSNGLYPGNGSAWGEQRMDVY
HHQQLQQFQHCQGQQQRQQEYNRLQQRRQILSQHQIPAQQPAANPPALLRHPKNFPPCND
FYYQANVPCQQGHRLMNHPGTDPSPHLQAKPYHSAPMIPVTSQHQKEFGLAQGGYGFPGI
TEQENDLNFHVQSSSTAYAVPSSRYSFPGQPSSVVTASRPHPVVPMTSAASTVPSGAPSC
LFLSGTLMDQEQPKIPEECPFAPLQTSDMFPEEIGPGAGVSLSESGFQDLDEALLDHQDV
GMEELGQGHDLLEEELLPELEAFVQEDGHAGFWTNTQPEVMTEGGLEDTENTACKYSSVS
EPPKNTNGSSSQPRLLSPPMKSSPSSSSSSSHSSSTEKRVPKRPPQMEASSLEDKQQKAD
RIISEAIARARERGEKNIPRVMSPESFPSSSQPRLHRAGSSKARAKEKGCKRARIVSSSK
SKQKSKIGKIVIKFGKKKKRKTESSDESDDEPPPQRPSKADDSKRRSNRQIKRKRYDEEQ
EVRLSEDDAKVSAKAKKINAHKEPAVQLFVENPSEEDGAVVDKIMASRIAKKEVSPGVVL
EVEEFFVKYKNYSYLHCEWATEQHLEKDKRIQQKIKRFKIKQAQRAHFFADMEEDLFNPD
YMEVDRVLEVSYCEDKDSGEPVVYYLVKWCSLPYEDSTWELKEDVDQSKILEFEQMQAAR
PDSRRVERPPASHWKKLEQSREYRNGNSLRDYQLEGVNWLLFNWYNRRNCILADEMGLGK
TIQSITFLHELYCTGIKAPFLIIAPLSTITNWEREFRTWTHLNVIVYHGSALSRQMLQQY
EMYFRDSQGHPVKGAYRFQAVITTFEMILGGCPELNAIDWRCVIIDEAHRLKNKNCKLLE
GFKLMRLEHKVLLTGTPLQNTVEELFSLLHFLEPTHFPSESVFMQEFGDMKTDEQVQKLQ
AILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFSFLAKGVGQANVP
NLVNTMMELRKCCNHPYLIKGAEEKILEDFREVCSPSALDFHLQAMVQSAGKLVLIDKLL
PKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDR
FVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNS
YEREMFDRASLKLGLDKAVLQSMSGRDNSLGGGGGGGGGGGGGAGGTMQQQLSKKEIEDL
LRRGAYGALMDEEDEGAKFCEEDIDQILQRRTKTITIESEGRGSTFAKASFVASGNRTDI
SLDDPNFWDKWAKKAEIDMDTVNGRNSLVIDTPRVRKQTRPFSATKDELAELSEGESSGD
DKPKLRRPHDRLNSYGRTECFRVEKNLLVYGWARWRDILQHGRFKRQLTERDVESICRAL
LAYCLVHYRGDDKIKSFMWDLIAPTEDGRTKELQNHLGLSTPVPRGRKGKKMKIQSSGFD
IQKAEWIRKHNPEHMLSDDGYKKHLKHHCNKVLLRVRMLYYLKQELIGSQCQNVLDGAEA
SLVEIWVPEPDHSDLPALWWDTLSDKCLLIGVYKHGYEKYNTIRGDPALCFLERVGKPDE
KAIAAEQRGNDFMDGDVDDPEYKPAPALLKDDIEDDASSPGELVITDTGGEAGPALDGGG
GSSFGTVTGAYWPSSSSLTARLRRLITASQRFTKSKQILQIHQTQQALPPEFCPLPPTVD
ETLTPKMVAKLERQQRWTRREEADFYRVVSTFGVVFDPDLGRFDWTKFRAMARLHKKTDE
SLHKYLCAFTAMCRRVCRLPQRDGDTVDPSLSIQPITEERASRTLYRVELLRQIREQVLR
HPQLYERLALCQPASDLPVWWETGTHDRDLLIGAAKHGVSRTDYHILRDPELGFMAAQRN
YSQNKGAPNPTPNHALLLGQTHASSPALSQHPGAAPSPLANSTPREVAPKEEPLIDGELE
AGMERWDPLKTSIPTGDAGENERRMEAARTKPLTAGADGRKQKKLRKRSRKEARRRSGSG
SDSDASSSSSSSSSSSRSSSSSSSSSRSGSNSSSSSSSCSSGSSSSSSSSSSEESDGEDV
PKNAAAVPGIKGFDEDSIASQSTTHDDAQDSHVTNGIANLSHPMHGGGYMLAASYWPKDR
VMINRLDSVCQVVLKGKWPGPRRVYEGSAVSSFYTTKLMDHASTLADDPAASPQGSKVKK
HDADREKEFSVKINDQEGSLKLTFQKQGLPLKRPMDAEDGPLAQQQYLARLHELQSASDT
CLTDYTKSLNNYPPAALGSQIRLNGMVDGQPAMKKRRGRRKNVEGMDLLFMNKNRPPAMP
DQASPAWSGVATPGMSPGFSQAAGPVDTESRVPVINLKDGTRLAGDDAPKRKDLDQWLKE
HPGFVADVGAFITGVSKIPFQEDRPKQKRHRCRNPNKIDVNSLTGEERVQIINRKNARKI
GGAFAPALKDLSRFLQENPEYGIPPEWADVVKQSGYLPESMFDRILTGPIVPEEVSRRGR
RPKNAMAKMAGAPGANANPALGVNPLLSNGLLSGLDLNSLQALQNLQSLQLTAGLMGLQN
DPNVAAMLPMMLSGMAGLPNLLGMGTLLGGQDGTASEDSGKKRGGGETASAESKRERTEC
QTSTAAAGQALALNPLLLSSMMYPGMLLNPGLNLPVANRPQATALPAQPAAPETPQNDPG
QQGEGQEPEERKDASGPEGSTKAESSSAESGGSSSSSEDSDSTDED
NT seq
8421 nt
NT seq
+upstream
nt +downstream
nt
atggactactttggcgacccgaaccttttcgagggcttggaccaggattgcttctcctcc
gggtccgtctctctggcggacgagttggacctgggctccgggttagaacccctgcagatg
aatccgccgggtcctgagaagcacgccaaccagcacggcgtgaacttttgccaacagttg
gggccgttcgatgggatgaaggtccaaaccggcatggcacaggcgtactccgcgccggga
ggagcattcgacagccggcggactcagtttcaagatccgaatccgaaccgagcgcctcat
tccaacggactctatcccggtaacggctcggcgtggggggaacagaggatggatgtctac
caccatcagcagcttcagcagtttcagcactgccagggtcagcaacagcgccaacaggag
tacaatcggctccagcagaggcggcagatcctgagccagcatcagataccggcacagcaa
ccagcagcgaaccctccggcgctgctccgccatcccaaaaactttccaccctgtaacgac
ttctactatcaagcgaacgtgccctgtcagcaaggtcaccggttaatgaatcaccccggg
acggaccctagtcctcatctgcaggccaagccctaccacagcgcgccaatgatcccggta
acgtctcagcaccaaaaagaattcgggctcgctcaaggggggtacgggtttcctgggatt
accgagcaggagaacgacctgaacttccacgtgcagtcctcctcaacagcctacgccgta
ccgtcctctcggtactccttccccggacagccgtcctctgtggtgaccgcgtcccggccg
caccctgtcgtccccatgacctccgcggcctccaccgtgccatccggcgcccccagctgc
ctgttcctgtcaggtaccctgatggaccaggagcagccgaagatcccagaggagtgtccg
ttcgcccccctgcagacctccgacatgttccccgaggagatcggccccggcgccggcgtg
agtctgagcgagagcgggttccaggatctggacgaggccctgctggatcaccaggacgtg
ggcatggaggagttagggcaggggcacgatctcctcgaggaggagctgctgcccgagctg
gaggctttcgttcaggaggacggtcacgccggattctggaccaacacacagccggaggtg
atgacggagggaggtttggaggatacggagaatacggcgtgtaaatattcatctgtgagt
gagcctccgaagaacactaatggttccagcagccagccgaggctgctcagcccgccgatg
aagagcagcccctcgtcctcctcctcgtcctcgcactcctcgtccacggagaagcgcgtc
cccaagcggccgccgcagatggaggcctcgtctctggaggacaagcagcagaaggccgac
cgcatcatctccgaggccatcgccagggcgcgcgagcggggcgagaagaacatcccgcgc
gtcatgagcccggagagcttccccagctcgtcccagccgcgcctccaccgggccggctcc
tccaaagccagggccaaggagaaggggtgcaagcgcgcccgcatcgtctcgtcctccaaa
tccaaacagaagagcaagattgggaaaatagtcatcaagttcggcaagaaaaagaaacgc
aagaccgaatcctcggacgaatcggacgacgaacctccgcctcagcgaccctcgaaggcc
gacgactcgaagcggcggtcgaacaggcagataaagaggaagcggtatgacgaggagcag
gaagtacggctgtccgaggacgacgcgaaggtcagcgccaaagccaagaagatcaacgct
cacaaggagccagcggtgcagttgtttgtggagaaccccagtgaggaagacggtgcagtg
gtggacaagatcatggcgtctcggatagcaaagaaggaggtctctccaggagtcgtgctt
gaagtggaggagttctttgtgaaatacaaaaactactcttatctacactgtgagtgggct
acagagcagcatttggagaaggacaagaggatccagcagaaaatcaaacgcttcaagatt
aaacaggcacaacgagcgcacttctttgctgatatggaggaggatctgtttaatcctgat
tacatggaggtggacagagtcctggaagtttcctactgtgaagacaaggactctggagag
ccggtggtgtattacctggtgaagtggtgctcgctgccgtacgaggacagcacgtgggag
ctgaaggaggacgtggatcagagtaagatcctggagtttgagcagatgcaggcagcaaga
ccagactctaggagagtggagcgacccccggccagtcactggaagaagctggagcagtcg
cgggagtatcggaatggtaacagtctcagggattaccagctagagggcgtgaactggctg
ctcttcaactggtacaacaggcgtaactgtatcttggctgacgagatgggtttgggcaaa
accatccagtccatcacgttcctgcatgagctttactgcactgggatcaaggcgcccttc
ctcatcatcgcaccgctttccaccatcactaactgggagcgcgagtttcgcacctggacc
cacctcaacgtcatcgtctatcacggcagcgcgctcagccgacagatgcttcagcaatac
gagatgtactttagagactctcagggtcatcctgtgaagggtgcgtaccggtttcaggcg
gttatcaccaccttcgagatgattttgggaggctgtcctgagctcaacgccatcgactgg
cgctgcgtcattatcgacgaagctcaccgcctgaaaaacaagaactgcaagctgctggag
ggcttcaaactcatgcgcctggaacacaaagtgctgctgactggaacgccgctgcagaac
acggtggaggaactgttcagcctgctgcatttcctggagcccacacactttccctccgag
agcgttttcatgcaggagttcggagacatgaagaccgacgaacaggtccaaaagctgcag
gccattctgaagcccatgatgctccgtcgcctgaaggaggacgtggagaagaagctggct
cctaaagaagagaccatcatcgaggtggagctcaccaacatccagaagaaatactaccgc
gccatcctggagaagaacttttccttcctggccaaaggagtcggccaggccaacgtcccc
aatctggtcaacaccatgatggagctgaggaaatgctgcaaccacccctacctcatcaaa
ggcgcagaggagaaaatcctggaggactttcgcgaggtgtgcagcccctctgccctggac
ttccacctgcaagccatggtccagtcggccggcaaactcgtcctcatcgataagctactt
ccgaaaatgaaggcgggcggccacaaagtactcatcttctctcagatggtgcgctgcctc
gacatcctcgaagactacctcatccagagacgatacctctacgagcggatagacgggcgc
gtgcgtggaaaccttcgccaggctgcgatcgatcgtttcagcaagcccgactcggaccgc
ttcgtcttcctgctgtgcaccagagcgggaggcctgggcattaacctgaccgctgccgac
acctgcatcatcttcgactcggactggaaccctcagaacgacctgcaggctcaggctcgc
tgccacagaatcgggcagaacaaggcggtgaaagtttaccggctcatcacacgcaactcg
tacgaacgggaaatgttcgacagggccagtctcaaactgggattggacaaggccgtgctg
cagagcatgagcggccgggacaacagcctgggaggaggtggtggaggaggaggaggtgga
ggaggaggagcaggagggacgatgcagcagcagctttcgaagaaggagatcgaggacctg
ctgaggcgcggagcttacggcgccctcatggacgaggaggacgaaggtgctaagttctgc
gaggaagatatcgaccagatcctccagcgcaggaccaaaaccatcaccatcgagtcggag
ggacgggggtccaccttcgctaaggccagttttgtagcatcagggaaccgcaccgatatc
tcactggacgaccccaacttctgggacaagtgggcgaagaaggctgagattgacatggac
acggtcaacggccgaaacagtctggtcatcgacacgcccagggtgcgcaagcagacgcga
cccttcagcgccaccaaggacgagctggccgagctctccgagggcgagagcagcggagac
gataagccgaaactgcgccgcccacacgaccggctcaacagttacggccggaccgagtgc
ttcagggtggagaagaacctcctggtttacgggtgggcccgctggagggacattctgcag
catggccgctttaagaggcagctaaccgagagagatgtggagagcatctgtcgggccctg
cttgcctactgcctggtgcactacagaggggacgacaagatcaagagcttcatgtgggac
ctgatcgccccgaccgaggacggcaggaccaaagagcttcagaaccacctcggactctcg
acgccagttcctcggggcagaaaggggaagaaaatgaagatccagtccagtgggtttgac
attcagaaggcagagtggatcaggaagcacaacccggagcacatgctgtcggacgacgga
tacaaaaaacacctgaagcaccactgcaacaaagtgttgttgagagtaagaatgctgtat
tacctgaaacaggaacttattggttcccagtgtcagaacgtactggacggagctgaagca
agtttggtggagatctgggttcctgagcctgatcattctgatctgcccgcgttatggtgg
gacactctctccgacaagtgtcttctgataggagtgtacaaacacggctatgagaagtac
aacactatccgcggagatcctgctctctgcttcctggagcgggtcggcaagccagacgag
aaggccatcgctgccgagcagagaggaaatgacttcatggatggggacgttgatgacccg
gagtacaagcccgctcccgctttgttgaaagacgatatcgaggatgacgcttcctctcca
ggagagctggtcataacggatacaggtggagaagccggcccggcgttagacggcggagga
ggcagttctttcggaacggtcacgggggcgtactggccgtcctcgtcgtcgctgacggcc
cggctgaggcgcctgatcacggcgtcccagcgcttcaccaagagcaaacagatcctgcag
atacaccagacccagcaggccctgccacctgaattctgccctctgccccctacggtcgac
gagacgctcacgcccaaaatggtcgcaaagctcgagagacagcaaaggtggaccagaaga
gaggaggcagatttctaccgcgtcgtctctacgttcggtgtggtgttcgatccggacctg
ggccgcttcgactggaccaagttccgagccatggcccggctgcacaagaaaaccgacgag
agtctgcacaagtacctgtgtgctttcaccgccatgtgcaggagggtgtgtcgcctgccg
cagagagacggtgacacggtggatccctcgctctccatccagcctatcacggaggagcgg
gcgtcacgcaccctgtaccgggtggagcttctccggcagatcagggagcaggtcctgcgc
caccctcagctctacgaacgcctggctctgtgccagccggcctcggaccttccggtgtgg
tgggagacgggcacgcacgaccgggacctgctgatcggagcggccaagcacggggtcagc
cggacggactaccacatcctcagagacccggagctgggcttcatggccgcgcagaggaac
tacagccagaacaagggtgcgccgaaccccaccccgaatcacgcactactgctgggacag
actcacgcctcgtctcccgctctgagccagcatcccggcgccgcgccttccccgctggcc
aactccacccccagggaggtggcccccaaggaggagccgctcatagacggagagctggaa
gcgggcatggagagatgggatccgctcaagacctccatacctacgggagacgccggggag
aacgagagacgcatggaggccgcccgaaccaaaccgctcacggccggcgcggacggcagg
aagcagaaaaagctccgcaagaggagccgcaaggaggccaggaggaggtcgggatcgggc
tccgattcggacgcgtcttcctccagctcttcgtccagttcttcgtcccgatcctcgtcc
tcctcctcgtcttcgtcgcgctccgggtccaattcctcgtcctcgtcttcttcctgctcc
tcaggctcgtcgtcttcgtcctcgtcttcgtcgtccgaagagagcgacggtgaagacgtc
cccaagaacgccgccgcggtgccaggcataaagggcttcgacgaggacagcatagcatct
cagagcactacacacgacgacgcgcaggacagtcacgtgaccaacggcatcgctaacctc
tcccaccccatgcacggcggaggctacatgctcgctgcttcctactggcccaaggaccgg
gtcatgataaaccgactggacagcgtctgtcaggtggtgttgaagggcaagtggcccggg
ccgcggcgcgtgtacgaggggagcgcggtgtcctcgttttacaccactaagctcatggac
cacgcctccactctggcggacgacccggcggcctcccctcaggggtcaaaggtgaagaag
catgatgcagacagagaaaaggagttctcggtcaaaatcaatgaccaggagggcagtctg
aagttgaccttccagaagcagggtttgcccttgaagcgcccgatggatgcggaagacgga
cctctggcacagcagcagtacctggcacggctacacgagctacagagcgcctccgatacc
tgtctgaccgactacacaaaatcactaaacaattacccaccagcagccctgggtagtcag
atccgacttaacggaatggtggacggtcagccggcgatgaagaagcgaagaggacgaagg
aagaacgtggagggaatggatcttctcttcatgaacaagaacagacctccagcaatgccc
gaccaggcttctccggcctggagtggggtcgcgaccccgggtatgagccctggcttctcc
caggctgccggacccgtagatacggagagcagagtccctgtaataaaccttaaggatgga
acgcggctcgccggggacgacgctcccaaacggaaggatctggatcagtggctgaaggag
cacccgggcttcgtggcggacgtgggagcgtttattacgggggtgagtaagatcccgttt
caggaggaccggccgaaacaaaaaaggcatcgctgcaggaatcctaataagatcgacgtc
aacagcctgacgggagaagagcgcgtccaaatcatcaacaggaaaaatgctcggaagatt
ggtggcgcgttcgctccggctctgaaggacctgagccgctttctccaggaaaacccggag
tacggaatccctccggaatgggcagacgtggtcaagcagtcgggctatttaccggagagc
atgttcgaccgtatcctaaccggccccatcgtacccgaggaggtgagcagacgaggccgt
cggcccaagaacgccatggccaagatggctggcgcccccggcgcgaacgccaacccggcc
ctgggcgtcaaccccctcctgagcaacgggctgctctccggtctggatctgaacagcctg
caggccctgcagaaccttcagagcctccagctcaccgccggactcatgggcctccagaac
gaccccaacgtggccgccatgcttcccatgatgctctcgggcatggccggcttacccaac
ctgctcggcatgggcaccctgctagggggccaggacggcaccgccagcgaggattcgggg
aagaaaagggggggcggagagaccgcgagcgcggagagcaaacgggagaggacagaatgt
caaacctcgacggcggcggcgggtcaggcgttagccctcaaccccttactgctctccagc
atgatgtacccagggatgctcctaaacccaggccttaacctgcctgtggccaatcggccg
caagctaccgccctcccggctcagcccgccgctcccgagaccccacagaacgatccgggt
cagcagggtgaagggcaggagcccgaggaacgcaaggacgccagcggtccagagggctcg
acgaaggcagagtcgtcctccgccgagtcggggggctcgtcctcgtcctccgaggattcg
gattccaccgatgaagactga
DBGET
integrated database retrieval system
