Trichomycterus rosablanca: 134304078
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Entry
134304078 CDS
T09921
Symbol
pdgfba
Name
(RefSeq) platelet-derived growth factor beta polypeptide a
KO
K17386
platelet-derived growth factor subunit B
Organism
trn
Trichomycterus rosablanca
Pathway
trn04010
MAPK signaling pathway
trn04020
Calcium signaling pathway
trn04510
Focal adhesion
trn04540
Gap junction
trn04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
134304078 (pdgfba)
04020 Calcium signaling pathway
134304078 (pdgfba)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
134304078 (pdgfba)
04540 Gap junction
134304078 (pdgfba)
09142 Cell motility
04810 Regulation of actin cytoskeleton
134304078 (pdgfba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
trn04052
]
134304078 (pdgfba)
00536 Glycosaminoglycan binding proteins [BR:
trn00536
]
134304078 (pdgfba)
Cytokines and neuropeptides [BR:
trn04052
]
Cytokines
Growth factors (RTK binding)
134304078 (pdgfba)
Glycosaminoglycan binding proteins [BR:
trn00536
]
Heparan sulfate / Heparin
Growth factors/receptors
134304078 (pdgfba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDGF
PT
DUF6721
PDGF_N
Motif
Other DBs
NCBI-GeneID:
134304078
NCBI-ProteinID:
XP_062845694
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All DBs
Position
27:complement(3020898..3036983)
Genome browser
AA seq
763 aa
AA seq
DB search
MSSWGLVLLVAFAACLRLGRAQADPLPLSLVDLVMNSPISSMKDLQELMDDHSVEEEEEN
EGRLNGTHKRLPRSLADVQVAQQAVCKVRTEVMEVTRSMFDRTNANFLLWPPCVEVQRCS
GCCNTRTLQCVPISSETRRLQMTKITFVNRQPSYEKVIIPVEDHLTCSCKSRTASPATWS
KTTTPLPPPRVLTKATASKSQSKEELHRHDDLKHNQRFQLDDRETQWQKKYTPGNTPRTP
IHTLTHSHTSPFQHALTHTPYINQGNLTTKQTGVGVTRMMSDTTQHIKHQQSDKQHHLDS
EKVPEHHTHHSESGKVPEHHTHDSESGKVPKHHTHHSESGKVPEHHTHHSESGKVPEHHT
HHSESGKVPEHHTHHSESGKVPEHHTHHSESGKVPEHHTHHSESGKVPEHHTHHSESGKV
PEHHTHHSESGKVPEHHKHHSESGKVPEHHTHHSESGKVPEHHTHHSESGKVSEHHTHHS
ESGKVPEHHTHHSESGKVSEHHTHHSESGKASEHHTHHSESGKASEHHTHHSESVNVPEN
RTHHTESKTVLKHHMNFASGDDTIKATTSTKHVHYHKHHSDKTTKQQPQHKPTQPHATNN
SQSEISLQHSGQMEAPILRFSDVEVIGQSSSQSGQSDLSGQSEVGHQSSQSETETHHHQH
HHHPTRAPAHHPTRAPTHHPTRAPTHHPTRAPTHHPTRAPTRHPTRAPTRHPSSTRQAVM
NAPPSKPPLPHTPPPSIAQRKRRRKQRRRMSKSAMRAMIMVMS
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgtgggggctcgtgctactcgtcgcgtttgcggcgtgtctgcggctcggccgc
gcgcaggccgaccctctccctctctcgctagtggatttggtaatgaactctccaatctca
tcaatgaaggatctgcaggagctgatggatgatcactccgtagaagaagaagaagagaac
gaggggcgattgaatggcacccataaacgccttcccagaagtcttgcagatgtacaggta
gcacagcaggctgtgtgtaaagtaaggacagaggtaatggaggtaacgcgctccatgttt
gaccggaccaacgctaacttcctgctatggcctccatgtgtggaggtgcagcgctgctca
ggatgctgtaatactagaaccctgcagtgtgtaccaatctccagtgagacacgccgctta
cagatgactaaaatcacatttgtgaacagacagcccagctatgagaaggtcataatacct
gttgaggatcatctcacctgtagctgtaaatcacgaacagccagtcctgccacatggagc
aagactaccacccctttaccccctcccagagtcctcaccaaagctacggcatccaaaagc
caatctaaagaggaactgcatcggcatgatgaccttaaacacaaccaaagattccagctg
gatgaccgagagactcagtggcaaaagaaatatactcctggaaacacaccaagaacgccc
atacacacactcacacactcacacaccagtccgttccagcatgccctcactcacacgcca
tacataaatcagggcaacctgacaaccaagcaaacaggagtcggtgttacacgcatgatg
agcgacacgacgcaacacataaaacaccaacaatcagataagcagcaccacttagattct
gagaaagttcctgaacaccacacacaccattcagaatctgggaaagttcctgaacaccac
acacacgattcagaatctgggaaagttcctaaacaccacacacaccattcagaatctggg
aaggttcctgaacaccacacacaccattccgaatctgggaaagttcctgaacaccacaca
caccattcagaatctgggaaagttcctgaacaccacacacaccattcagaatctgggaaa
gttcctgaacaccacacacaccattcagaatctgggaaagttcctgaacaccacacacac
cattcagaatctgggaaagttcctgaacaccatacacaccattcagaatctgggaaagtt
cctgaacaccacacacaccattcagaatctgggaaggttcctgaacaccacaaacaccat
tcagaatccgggaaggttcctgaacaccacacacaccattcagaatctgggaaagttcct
gaacaccacacacaccattcagaatctggaaaggtttctgaacaccacacacaccattca
gaatctgggaaggttcctgaacaccacacacaccattcagaatctggaaaggtttctgaa
caccacacacaccattcagaatctgggaaagcttctgaacaccacacacaccattcagaa
tctgggaaagcttctgaacaccacacacaccattcagaatctgtaaacgttccagaaaac
cgaacacaccatacagaatctaagacagtgttgaaacatcacatgaactttgcaagtgga
gatgataccattaaagcaaccacaagtacaaaacatgtgcattatcacaaacatcacagt
gacaaaacaacaaagcaacaaccacagcacaagcccacccagccgcatgcaactaataac
agccaatcagaaatctctcttcaacacagtggccagatggaagcacctattctcagattc
agtgatgtcgaggtcattggtcaatccagcagccagtctggccaatcagatctctctggc
cagtcagaagttggccaccaatccagtcaatcagagacagaaacacatcatcatcagcac
catcatcatccaacaagagcacctgcacatcatccaacaagagcacctacacatcatcca
acaagagcacctacacatcatccaacaagagcacctacacatcatccaacaagagcacct
acacgtcatccaacaagagcacctacacgtcatccaagtagcacaagacaagcagtgatg
aatgcccctcctagtaaaccccccttgccccacacaccccctccgtccatcgctcagcgc
aaacgaaggagaaagcaaagaaggagaatgagcaagtccgccatgagagccatgatcatg
gtcatgtcctaa
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