Trichomycterus rosablanca: 134304374
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Entry
134304374 CDS
T09921
Symbol
lingo1b
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1-B isoform X1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134304374 (lingo1b)
Membrane trafficking [BR:
trn04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
134304374 (lingo1b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
I-set
Ig_3
Ig_2
ig
LRR_9
LRRNT
LRR_EndoS
V-set
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
134304374
NCBI-ProteinID:
XP_062846056
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All DBs
Position
27:154332..191378
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AA seq
620 aa
AA seq
DB search
MRRVTSRMVAGEVSGHSYLVACWQPILILMLGTVLSGSATGCPSRCECSAQERSVLCPRR
KLVALPEGIPIETRLLDLSKNRLKAINPEEFINYPHLEELQLNENVIAVIEPGAFSNLFG
LRTLGLRNNKLKLIQLGVFTGLSNLTKLDISENKIVILLDHMFQDLYNLKELEVGDSELV
FISHRAFNGLSSLEQLTMERCNLTSVPTEAFSHLHNLLVLKLWHFNVNTIKDFSFKRLYR
LKVLEVTNWPFLSSMTDKALHGLNITSLSITHCNLTAIPYVAIQHLVYLRSLNFSFNPIE
TVEGNKLHNLMRLQVFDLVGGRLVAIEPYSFRGLNYLKVLNISSNSLSTLEESAFHSVGN
LETLALYDNPLACDCRLLWVFRRRWRLNFNKQQPSCATPEYVQGKEFKDFPDILPANYFT
CQKSKIRDHKPLQRFVDEGTTVHFACQADGDPTPVIMWQTPRKQIITMKSVGRLLVSLDG
TLEVRYAQTKDNGTYTCIATNAGGNDTKLAHLHVHSYSPNWPNQPNKTFAFISNQPNESG
ANETGRSVPFPFDMKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNAKPNIEIEYVPR
RVDGEATPTEETHKIRMKMM
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgaggagggtaaccagcagaatggtggctggcgaggtgagtgggcacagctacctggtg
gcatgctggcagcccattctcatcctgatgctgggcactgtgctctcaggctcagccaca
ggatgcccgtcccgctgcgagtgcagtgcccaggagcgctcggtcctgtgcccccgcagg
aaactggtcgccctcccggaggggatacccatcgagactcggctgctggacctgagcaag
aaccgcctgaaagccatcaaccccgaagagttcatcaactacccccacctggaggagctg
cagctcaacgagaacgtgatcgccgtcatcgagccgggcgccttcagcaatctgttcggg
ttacggacgttaggactgcgcaacaacaagctgaagctcatacagctgggggtcttcacc
ggcctgagcaacctcaccaaactggatattagtgagaataaaatagtcatccttttagac
cacatgttccaggacctttacaacctcaaagagcttgaggtgggagatagtgagctggtc
ttcatctctcatagagcctttaatggactcagtagtttagagcagctcaccatggagaga
tgcaacctgacctctgtgcccacagaggcgtttagtcaccttcataacctgctggtgctc
aagctgtggcattttaatgtgaacaccattaaagacttctccttcaagagactctaccgg
ctgaaagtcttagaggtcacaaactggccgttcctcagtagcatgacggataaagccctg
cacgggctcaacattaccagtttaagcatcacacactgcaaccttactgccattccatat
gtggccatccagcatcttgtgtaccttcgctccctcaacttctctttcaaccccatagaa
actgtcgagggcaacaagctgcacaatctgatgaggctgcaggttttcgacctggtaggc
ggccgcctggtcgctattgagccttactcgttccggggactgaactacctgaaggtgctt
aacatttccagcaatagcctgagcactttggaggagtctgcctttcactccgtggggaac
ctggagacgctcgccctgtacgacaaccccttggcatgcgactgccgcctgctgtgggtt
ttccgtcgacgctggaggctcaactttaacaagcagcagccgtcctgtgccacgcccgag
tacgtgcaaggcaaggagtttaaagacttcccagacatcctccctgctaactacttcacc
tgccagaagtccaagatccgggaccacaaacccctccagagattcgtggacgaagggaca
acggttcatttcgcatgccaagcggacggagatcccacccccgtgatcatgtggcagact
cccaggaagcaaatcatcaccatgaaaagtgtcgggcgtctgttggtgtccctggacggc
accctcgaggtgcgatacgcccaaacgaaagataacggcacttatacgtgtatagccacc
aacgccggaggtaacgacaccaagctcgcccatttacacgtccatagttattcccccaac
tggcccaatcagccaaataaaacattcgctttcatctccaaccagcccaatgaaagtggt
gccaacgagactggaagatcagtcccatttcccttcgacatgaagactctcatcattgcg
actactatgggatttatttctttccttggagtggttttgttttgtcttgttctcctcttc
ctttggagtcgagggaaaggtaacgccaagccaaacatcgagatcgagtatgtgccacgt
agagtcgacggagaggccactccgaccgaggaaacccataagatcagaatgaaaatgatg
tga
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