KEGG   Trichomycterus rosablanca: 134309119
Entry
134309119         CDS       T09921                                 
Symbol
rbbp4
Name
(RefSeq) histone-binding protein RBBP4
  KO
K10752  histone-binding protein RBBP4
Organism
trn  Trichomycterus rosablanca
Pathway
trn03082  ATP-dependent chromatin remodeling
trn03083  Polycomb repressive complex
trn04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:trn00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    134309119 (rbbp4)
   03083 Polycomb repressive complex
    134309119 (rbbp4)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    134309119 (rbbp4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:trn03036]
    134309119 (rbbp4)
Chromosome and associated proteins [BR:trn03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     134309119 (rbbp4)
  Histone modification proteins
   HAT complexes
    HATB complex
     134309119 (rbbp4)
   HDAC complexes
    Sin3A-HDAC complex
     134309119 (rbbp4)
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     134309119 (rbbp4)
    PRC2.2
     134309119 (rbbp4)
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     134309119 (rbbp4)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    134309119 (rbbp4)
  Chromatin remodeling factors
   NuRD complex
    134309119 (rbbp4)
   NuRF complex
    134309119 (rbbp4)
   NuRF complex (fruit fly)
    134309119 (rbbp4)
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st Beta-prop_EML EIF3I WD40_MABP1-WDR62_2nd WD_LRWD1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_DCAF12 ANAPC4_WD40 Beta-prop_RIG_1st WD40_MABP1-WDR62_1st eIF2A Beta-prop_IFT140_1st MIOS_WD40 Beta-prop_SPT8 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 134309119
NCBI-ProteinID: XP_062846813
LinkDB
Position
2:complement(32987763..33000945)
AA seq 424 aa
MADKEAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKD
YSVHRLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIK
INHEGEVNRARYMPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECTPDLRLRGHQKEG
YGLSWNPNLSGCLLSASDDHTICLWDISTVPKEGKIVDAKTIFTGHTAVVEDVSWHLLHE
SLFGSVADDQKLMIWDTRSNNTSKPSHAVDAHTAEVNCLSFNPYSEFILATGSADKTVAL
WDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAE
DGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGAADT
EVQG
NT seq 1275 nt   +upstreamnt  +downstreamnt
atggctgacaaagaagcggcttttgatgatgcagtggaggagagggtgattaatgaagaa
tacaagatctggaagaaaaacacaccatttctttatgatctggtgatgacccatgcactt
gagtggcccagccttacagcacagtggctgcctgatgtcaccaggcctgagggtaaagac
tacagtgtccaccggttggttcttggcacacacacctcggatgaacagaatcatctcgtt
attgccagcgttcagttgcctaacgatgatgctcagtttgacgcttcacactacgacagt
gagaaaggggagtttggtggctttggctcagtgagtggaaagattgaaatcgagattaag
attaaccatgaaggagaagtaaaccgagcacgctacatgcctcagaacccctgcatcatt
gctaccaaaactcccaccagtgatgtgctagttttcgattataccaaacacccatccaaa
cccgatccttctggagagtgcactcctgacttgcgattgaggggacatcaaaaagaagga
tatggcctgtcttggaaccccaatctaagtggctgcctgctgagtgcctctgatgatcat
acaatctgtctctgggatatcagtacagtacctaaggaggggaagatcgttgatgctaag
actattttcaccggtcacactgctgtggttgaggatgtttcatggcatcttctgcatgag
tctctctttggatcagtggcagatgaccaaaaacttatgatttgggatacacgttccaac
aacacatccaagcccagtcatgcggtagatgctcacactgctgaagtcaattgcttgtcc
ttcaatccttacagtgagtttatccttgccactggctcagctgacaagactgttgcacta
tgggatctgaggaacctgaagttaaagttgcattcatttgagtcgcataaagatgaaatt
ttccaggttcagtggtcacctcataatgagacgatcctagcctccagtggaacagacaga
cgactaaatgtctgggaccttagtaaaattggtgaagagcagtccccagaagatgctgag
gatggacctccagaattactgtttattcatggtggccacacagctaagatctctgacttc
tcctggaaccccaatgaaccgtgggtgatttgctctgtgtctgaggataacatcatgcaa
gtctggcaaatggcggagaacatttacaatgatgaagaccctgagggagcagcagacaca
gaagtccaaggataa

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