Trichomycterus rosablanca: 134309186
Help
Entry
134309186 CDS
T09921
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
trn
Trichomycterus rosablanca
Pathway
trn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134309186 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134309186 (xab2)
03041 Spliceosome [BR:
trn03041
]
134309186 (xab2)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
134309186 (xab2)
Spliceosome [BR:
trn03041
]
Complex B
Other components
Prp19-related factors
134309186 (xab2)
Complex C
134309186 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_8
TPR_16
TPR_15
ARM_TT21_C
ARM_TT21
RPN7
NRDE-2
Tcf25
TPR_1
DUF4515
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
134309186
NCBI-ProteinID:
XP_062846894
LinkDB
All DBs
Position
2:complement(39452338..39474772)
Genome browser
AA seq
847 aa
AA seq
DB search
MPTLNGKSDVMFEDDDLPYEEEIIRNPYSVKCWTRYIEHKQNAPKAVLNMIYERALKELP
GSYKLWYNYLRERRKQIKGRCITDPSYEEVNNCHERALVFMHKMPRIWLDYCQFIVSQSK
ITRSRRTFDRALRALPITQHPRIWPLYLKFARNLPLPETAICVYRRYLKLSPENAEEYID
YLRSVERLDEAAIRLAAVVNDESFVSKEGKSNYQLWHELCDLISKNPDKVSSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSEMGKDGDDDVDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGIPRQIINTYTEAVQTVDPIKSTGKPHSLWVAFAKFYEDNEQLDDARTIFNKATKVN
YKQVDDLAAVWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFKWPNVYDIWNTYLTKFIERYGGKKLERARDLFEQALDGCPAKFAKTIYLLYARLEEE
YGLARHAMAVYERATQAVEAEERHLMFNIYIKRAAEIYGVTHTRSIYQKAIEVLPDEHAR
DMCLRFADMESKLGEIDRARAIYSYCSEICDPRMTANFWQMWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSATGTVSDLAPGQSGVDDMKMLEQKAQQLAAEAEQ
DKPKDKILFVRSDTSRSELAELAKQANPDEIDIDEDEEDEDGDVEPDEVQLEQKSVPTAV
FGGLKDD
NT seq
2544 nt
NT seq
+upstream
nt +downstream
nt
atgccgactctcaatgggaaatccgacgttatgtttgaagatgatgatttaccctatgaa
gaagaaatcatcaggaatccatattccgtcaagtgctggacgcggtatattgaacacaaa
caaaatgcaccaaaggcggtgctcaacatgatttatgaacgtgcccttaaagaactacct
ggcagttataaattgtggtacaattatctgagagagaggaggaagcaaattaaagggaga
tgcattacagatccatcatacgaggaggtcaacaactgccacgagagagcactggtcttt
atgcacaagatgccgaggatatggctggattactgtcagttcattgtgtctcagagcaaa
atcacaagaagccgtcggacattcgaccgagcattgagagcattacccattacccaacat
ccccgcatctggcccctgtatctcaagtttgctcgaaacttacccctgcctgaaacagcc
atctgtgtttatcgccggtatcttaagctttctccagagaatgcagaggagtatatcgat
tacctgcggtccgttgagcggctggatgaggctgcaatccgactagcagctgtcgtcaat
gatgaaagctttgtttcaaaagaaggcaaatcaaactaccagctgtggcacgagctgtgc
gacctgatctccaagaacccagacaaggtgtcttccctgaatgtaggtgccatcatccgg
ggtggcctgacacggttcacagaccagctaggcaagctctggtgctcactggctgactac
tacatccgcagcggtcactttgagaaggctcgtgatgtatacgaggaggccattcagact
gtagttactgtacgagacttcacccaggtgttcgacagctacgctcagttcgaggagagc
atgattgctgccaagatggagaccacgtccgagatgggcaaagatggagatgatgacgtt
gatctggagttgcgcttggctcggtttgaacagctgatcacgcgccggccactcttactg
aacagtgtgctgttgaggcagaacccacacaacgtccatgaatggcacaagagagtcaaa
ctctatgaaggcattcctcgacagatcatcaacacgtacactgaggctgtacagacagtt
gaccccataaagtcaaccggaaagccccactccctctgggtggcctttgccaagttctat
gaggataatgagcagctggatgatgcaagaactatcttcaacaaagcaaccaaggtcaac
tacaagcaggtggacgacctggcagcagtgtggtgtgaatatggtgagatggagttgcgg
catgagaactacgatcaggcactacgcattctcaggaaagccacagcaatcccagcaaga
aaagcagagtacttcgattcatcagaaccagtgcagaatcgagtgtataaatcgcttaag
gtctggtcaatgctggcagatctggaggagagtctcggcacctttcagtcaacaaaagca
gtgtatgaccgcattattgacctccgtatagcgactccacagatcatcattaactacgcc
atgttcctcgaggaacacaattactttgaggaaagctttaaagcatatgagcgaggcatt
gcactgttcaagtggcctaatgtgtatgacatctggaacacgtacctcaccaagttcatc
gaacgctacggaggcaaaaaactggaacgagcacgagatctgtttgagcaagctttggat
ggctgtcctgccaagtttgcaaaaaccatctacctgctgtatgctagactggaggaggag
tacgggctagccaggcatgccatggctgtgtatgagagagcaacgcaggctgtggaggca
gaagagcgccaccttatgttcaacatctacattaaaagagctgcagagatctatggggtt
actcacaccagatccatctaccaaaaagctattgaggtccttccagatgaacatgctagg
gatatgtgtctacgctttgctgacatggagagcaaacttggcgagatcgaccgggcgagg
gccatttattcatactgctctgagatatgcgatcccaggatgacggctaatttctggcag
atgtggaaggagtttgagattcgccatggcaatgaggacacaatccgcgagatgcttagg
atcaaacgaagtgtccaggccacctacaacacacaggtcaacttcatgtcctcacagatg
cttaaagcaaccaccagtgctacaggcacagtatcagaccttgctccaggtcagagtggt
gttgatgacatgaagatgttggaacagaaggcccagcagttggctgcagaagcagaacag
gataaacccaaagacaagatactctttgtcaggagtgacacctctcgcagtgaactggct
gaactggctaaacaagccaacccagacgagatcgacatcgatgaggatgaggaagacgaa
gacggagatgtagaaccagacgaggtgcagctggagcagaagagtgtccccactgctgtg
tttggagggctgaaggatgactag
DBGET
integrated database retrieval system
