Trichomycterus rosablanca: 134309360
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Entry
134309360 CDS
T09921
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn02010
ABC transporters
trn04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
134309360 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
134309360 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
trn02000
]
134309360 (abca1b)
Transporters [BR:
trn02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
134309360 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
134309360
NCBI-ProteinID:
XP_062847033
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All DBs
Position
1:26497177..26546606
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AA seq
1920 aa
AA seq
DB search
MKNMETSPISRMIWRALKPLLMGKILYTPHTPATQKIIQEVNRTFQELGILRDLGGMWEE
TRPKVWQFMENSEEVDLLRTLLQNNITASYFRAQLSGTQWSVQDLSSFLSKQSEDTRPPG
TAFTWRNVFNETDQAIQSISRFMECVNLDKLEPVSTEEKLVNESLSLLDNRKFWAGIVFP
DIDLNSSELPPHVNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGFSYLQDV
IEQSIIRAVTGTKEKTGVYIQQMPYPCYVDDIFLRIMSRSMPLFMTLAWMYSVAIIIKSV
VYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLMSAGLLVLLLKMGNLLPYSDPGVVF
LFLGSFAVVTIMQCFLISTVFARANLAAACGGIIYFTLYLPYVLCVAWEEYIGLSAKVIA
SLLSPVAFGFGCEYFALFEEQGVGIQWSNLISSPMEGDDYSLTTCMIMMYFDAFLYGVMT
WYIEAVFPGQYGIPRPWYFPVTKSYWFGEGEQRQAPTVNGKRANAGVCIEEEPTHLELGV
YIENLIKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYI
MGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEEVKREIDQILYDT
GLPHKRQSRTSELSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLLKYRA
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTHLGSGYYLTLVKKEPEASIS
SSRNSTTTVSYIKKDEAASDSSSDAGLGSDHESDAATAVGTSWADSPVFPADVSLISGLV
IKHVPNARMVEDLGHEITYILPYESAKDGAFVELFGDLDDHLADLGISSYGVSDTTLEEI
FLKVAEDSGVDTEIMSDGTLPVRRRMRHAFGADHQSCLKPLTEDDHVNGNYSELDPDSKE
TDYLNTTDGKGSYQVQGWNLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALVF
SLIVPPFGKYPSLALQPWMYEEQVTFFSNDAPEDASTQRLLSALTEGPGFGTRCMEGEPL
LDVLCTMGDEDWSTPEVPENVWEVFKNANWTMDNPSPPCECSCDGKKKMLPECPASAGGL
PPPQIMISEKDTLQNLTGRNISDYLVKTYAQIIGKSLKNKVWVNEFRYGGFSLGARSTQV
LPPAQEIDDAISRVREIFHLRKNTGTAADRFLKSLSAFINNLDTKNNVKIWFNNKGWHSI
GAFLNVMNNGILRANLPPGKDPSKYGITAHNHPLNLTKEQLSQVALVTTSVDVLVSICVI
FAMSFVPASFVVFLIQERVSKAKHMQFISGVQPYLYWMANFIWDMCNYIVPATLVIIIFV
CFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFLFKIPSTAYVVLTSVNILIGINGS
VSTFVLELFGNNEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRS
PLEWDMVGKNLFAMAVEGAVFFIITVLIQYRFFFKPRSFRPKLSPIGEEDEDVARERQRI
ISGAGQGDILELRELTKVYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGD
SAVTSGEAFLARKSILREIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEAEVC
EVAEWGIRKLGLIKYAEKAAGSYSGGNMRKLSTAMALIGGPPVIFLDEPTTGMDPKARRA
LWNCIHSLIKAGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTII
LRVAGPEPDLQPVMKFIESELLGSTLKEKHRNMLQYQLPSSLCSLAHIFSILAKNKDFLR
IEDYSVSQTTLDQVFVNFAKDQSDDHSDHSIRRKEAVVDIPLLGMSATSKKKEKPKESFV
NT seq
5763 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacatggagacgagtcctatctctcgcatgatctggagagctttgaagcctctg
ctcatgggaaaaatcctgtacacccctcacactcccgctacacaaaagatcatccaagag
gtcaacaggacatttcaggagttgggtatcctcagagacctgggcggaatgtgggaggag
accagacccaaagtttggcaattcatggagaacagtgaggaagtagacctgttacggact
ttgctacagaacaatatcacagcctcttacttcagggcccagctgagtggcactcagtgg
agtgtacaggatctgagcagttttttgtccaagcagtcggaggacacacgtccacctgga
acagcattcacatggagaaacgtctttaatgagacggatcaggccattcaaagcatctct
cgcttcatggagtgtgtaaacctagataaattggagcctgtgagcacagaggaaaagtta
gtgaacgagtctctcagtttgctggataacaggaagttttgggctggaattgtgtttcct
gacatcgacctgaacagctctgagctccctccccatgtcaactataagatccgtatggac
atcgataacgtagagcgcacaaacaagatcaaagatgcatactgggaccctggtccccga
gctgacccatttgaggatatgcggtacatttggggtggtttctcatacctgcaagatgtt
atagagcagagcattatcagagcagtaacagggaccaaggagaagactggagtctacatc
cagcagatgccatacccttgttatgttgatgacattttcttgcgtataatgagccgttcc
atgcctctgttcatgaccctggcctggatgtactctgtagccatcattataaagagtgtg
gtctatgagaaggaggctagacttaaggaaaccatgaggattatgggactggacaatggt
attttgtggttcagctggttcatcagcagtcttatccctctactcatgagtgctggacta
ctggtgcttttactcaagatgggaaatcttcttccttacagtgaccctggtgtggtcttc
ctcttcttgggctcttttgctgtggtcaccatcatgcagtgtttccttatcagcacagtg
tttgctcgggccaacctggccgctgcctgtggaggaatcatctattttacactgtactta
ccctacgtgctgtgtgtggcctgggaggaatacataggtctttcagctaaagtcatagct
agtctgctgtcccctgtggcgtttggttttggctgtgaatacttcgccctttttgaggag
cagggagtgggaatccaatggagcaacctcatctctagcccaatggagggtgatgattat
agcctcaccacctgcatgatcatgatgtactttgatgcctttctttatggtgtcatgacg
tggtatattgaggcggtgttccctgggcagtatggcattcccagaccatggtacttccca
gtcaccaagtcctattggtttggagaaggagaacaaaggcaggcacctacagtaaatgga
aaaagggcaaatgcaggagtgtgcattgaggaagagccaactcaccttgagctaggagtg
tatatcgagaacctgataaaggtttaccgccatggcaaaaagcttgctgtggacggactg
acattgggcttctacgagggccagatcacatccttcctgggtcacaatggagctgggaaa
accaccaccatgtccatccttactggtctatttccaccaacctctggcacggcatacatc
atgggtaaagacattcgctcagagctcagtgcaatccgacaaagcctgggtgtgtgccct
caacataatgtcctcttcagcatgctgacagtggaggagcacatctggttctatgcacga
ctcaaaggtctgtctgaagaggaggtaaagcgtgagattgatcagatcttgtatgacacc
ggtctcccacacaaacgccagtccaggaccagtgagctgtctggtggaatgcagagaaag
ctttcagtggccctcgcatttgttggtggatcaaaggtagtcattctggatgaaccaaca
gctggtgttgacccctatgctcgccggggaatctgggacctcctgctaaagtaccgtgca
ggccggaccatcatcctttccactcatcacatggatgaagctgacatcttaggcgaccgt
atagctattatctctcatggaaagctgtgctgtgtgggctcctcgctcttccttaagact
catcttggatctggatactacctcactttggttaagaaagaaccggaagcttctattagc
tcaagcagaaattccaccactactgtttcatacatcaagaaggatgaagcagcttcagat
agcagttcagatgctggtctgggtagcgaccatgagagtgatgctgccacagctgttggc
acatcatgggctgactcacctgtgtttcctgcagacgtctcactcatctcaggtctagtc
attaagcacgtccctaatgcacgcatggtggaagatctgggccatgagatcacctacatc
ctgccttatgaatctgctaaagatggtgcctttgttgaactctttggtgatctggatgat
catcttgctgatttgggaatctctagttatggtgtttcagacacgacacttgaagagatt
ttccttaaagtggcagaggatagcggtgtcgacacggaaattatgtcagatggcacactc
ccagttcgcagacgcatgcggcatgcttttggagccgaccaccagagctgccttaaaccc
ctaactgaagacgaccacgttaacggcaattattctgaacttgatccagactctaaggag
acagattatttgaatactacagatggtaaaggctcataccaggtccagggctggaactta
aagagacagcagtttgtagctttgctttggaaaagatttctgtatgctcgccgttccagg
aagggattctttgcccagattgttctgcctgctgtatttgtgtgcattgctctggtgttc
agtcttattgttcctccatttggaaaatatcccagtcttgctctgcagccctggatgtat
gaagaacaggtcacctttttcagtaatgatgcacctgaggatgccagcactcaaagatta
ctgtctgcacttacagaaggccctgggtttggaacacgatgcatggaaggagagccatta
ctggatgtgctatgcactatgggtgatgaggactggtcaacaccggaagtaccagaaaat
gtatgggaggtgttcaagaatgctaactggacaatggacaacccttccccaccatgtgag
tgcagctgtgatggcaagaagaagatgcttccagaatgccctgctagtgctggaggcctg
ccacctcctcagataatgataagtgagaaagacaccctacaaaatctgaccggaagaaac
atctctgactacctcgtcaagacctatgctcaaattattggcaaaagtttaaagaacaag
gtgtgggtaaacgagtttagatatggcggtttctcactgggtgccagaagtactcaggtg
ctgcctcctgctcaggagattgatgatgccatttctcgtgtgcgagagatattccacctc
agaaagaacacagggacagcagctgaccgcttcttaaaaagtctatctgcattcatcaac
aacttggacaccaaaaataatgttaagatttggttcaataacaagggttggcacagtatt
ggagcctttcttaatgtgatgaacaatggtatcctgcgtgccaatctgcctcccggcaag
gacccaagcaagtatggcatcacagcccacaatcatcctctgaaccttaccaaagaacaa
ctttcccaagtggcactggtaacaacctcggtggatgtactggtgtccatctgcgttatt
tttgccatgtctttcgttcctgctagctttgtagtcttccttatccaagagcgtgttagc
aaggccaaacatatgcaatttatcagtggagttcagccatacctctactggatggcaaat
tttatctgggatatgtgcaattacattgtaccagcaacactggtcataatcatctttgtg
tgcttccaacaaaaagcctatgtttcctccaccaacctgcctgtgctggctttgttgctg
cttctctatgggtggtctatcactcctctgatgtacccagcttcattcctgtttaaaatc
cccagcacagcttatgtggtactaaccagtgtcaacatcctgattggaatcaatggcagt
gtgtctacatttgtactggagttgtttggcaataatgaaattggtggaatcaacgacatc
ctaaagaacgtacttttgatcttccctcacttctgtcttgggcgaggcctgatcgacatg
gtgaagaaccaggccatggctgatgcgctggagagatttggtgagaaccgtttccgatct
cctcttgagtgggacatggtgggtaagaacctctttgccatggctgtggaaggagcggtc
ttcttcattatcaccgtcctcatccaataccgtttcttctttaaaccaaggtcttttcgc
cctaagctgagtcccattggagaagaggatgaggatgtggccagggagaggcagagaatc
atctctggagcaggacaaggagacattcttgagctccgtgagcttaccaaggtttataag
aggaaacagaagcctgctgtggataggctgtgtgtgggcatccctccaggagagtgtttt
ggtctacttggagtaaatggagctggaaagacaagtacatttaagatgctaactggtgat
tctgcagtgaccagtggagaagccttcctggctaggaagagtatacttagagaaatagat
gaagtacatcagaacatgggctactgccctcagttcgatgccatcaatgatctgcttaca
ggcagagagcatctggagttttatgctatccttcgtggtgttcctgaagcagaagtgtgt
gaggtggctgaatggggtatccgtaagctgggtcttataaagtacgctgaaaaagcagcc
ggaagctacagtgggggcaacatgcgcaaactctctacagccatggcactcatcggaggc
ccaccagtaatcttcctggacgagcccactactggtatggaccccaaggcccgtcgagct
ctgtggaactgcattcacagtcttatcaaggcaggacgctctgttgtgctcacctcacac
agcatggaggaatgtgaggctttgtgcaccagaatggctatcatggtaaatggccgattc
cgctgtctgggaagcgttcagcatctgaaaaacagatttggtgatgggtacaccatcatc
ctgagggtagcaggacctgaaccagacctgcagcctgtgatgaagtttattgagagtgag
ctgcttggcagcacattgaaggagaagcacagaaacatgctacagtatcagctgccctca
tccctttgctccctcgctcacatcttcagcatacttgccaagaacaaagattttctcagg
atagaagattactcagtttcccaaacaacactggaccaggtgtttgttaattttgcaaag
gaccaaagtgacgatcactcagaccactcgatacgacgcaaagaggctgtggtggacatt
cctctgctgggcatgtcagccacttcaaagaaaaaagagaagcccaaggagagctttgtg
tga
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