Trichomycterus rosablanca: 134309741
Help
Entry
134309741 CDS
T09921
Symbol
snx27b
Name
(RefSeq) sorting nexin-27b isoform X1
KO
K17936
sorting nexin-27
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134309741 (snx27b)
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
trn04990
]
134309741 (snx27b)
Membrane trafficking [BR:
trn04131
]
Protein recycling
Others
Others
134309741 (snx27b)
Domain-containing proteins not elsewhere classified [BR:
trn04990
]
Phox homology (PX) domain-containing proteins
Sorting nexins
134309741 (snx27b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PX
PDZ
RA
PDZ_6
SNX17-27-31_F1_FERM
RA_2
PDZ_2
SNX17_FERM_C
SNX17-31_F2_FERM
VirE3
USP7_C2
DarA_N
RA_3
Motif
Other DBs
NCBI-GeneID:
134309741
NCBI-ProteinID:
XP_062847069
LinkDB
All DBs
Position
3:complement(18016400..18076055)
Genome browser
AA seq
553 aa
AA seq
DB search
MADVEEGDETRSAVPAALRCSSRYGGTAGPRLVRIVKSDSGYGFNVRGQVSEGGQLRSIN
GELYAPLQHVSAVLPGGAADRAGINKGDRILEVNGVNVEGATHKQVVDLIRAGERELVLA
VLSVPQPETDSLDPGDDGSAQSCYDYSDKQAVPISVPTYKHVEQNGEKFVVFNVYMAGRQ
LCSKRYREFAILHQNLKREFATFTFPKLPGKWPFTLSEQQLDARRRGLEEYLERICSVRV
IGESDVMQEFLSESDENYNGVSDVELRIAMPDKTTVTVRVRKNCTTDQVYQAVVMKLGMD
SITASYFALFEVINHSFVRKLAPNEFPHKLYVQNYTSAVPGTCLTLRKWLFTTEEEFLLN
DNELAINYCFHQALDDVKRGVIKAEDKSYQLQKLSEQRKISMYLSMVRTCEGYNEIIFPH
CACDSRRKGQVITAISIHHFKLHACTEEGTLENQVIAFDWAEMQRWDTDEEGMAFCFEYA
RGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKEVEEEVMDKDNKNCSKDEYLPAVETQ
KGWRNLRQEIVTP
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtcgaggagggagacgagacgcgttctgctgtccctgcggcactgcgctgc
tcctctcggtacggcggcactgcgggcccgcgcctcgtccgcatcgtcaagtccgactcc
ggctacggcttcaacgtccgcggccaggtgagcgagggcggccagctgcggagcatcaac
ggcgagctgtacgctccgctccagcatgtcagcgctgtgctaccaggcggagctgccgac
cgagccggtatcaacaagggcgatcggatcctcgaagtgaatggtgtgaacgtggaagga
gccactcataaacaggtggtggatctgatccgagctggtgaaagggaactggtcctcgct
gtcctttctgtcccccagccagagacagacagcctggacccaggagacgacggctcggct
cagtcctgctacgactacagcgacaagcaggccgtgcccatctcggtgcccacctacaaa
cacgtggagcagaacggcgagaagtttgtggtatttaacgtgtacatggctggtaggcag
ctgtgctccaagcgctacagggagttcgctattctgcatcagaacctgaagagagagttt
gccacgttcacgttccccaagctgcccggaaaatggcctttcactctgtctgagcagcag
ctagatgcccgcaggaggggtcttgaggaatacctagagagaatatgttctgtgcgagtg
attggggagagtgacgtcatgcaggagttcttgtctgaatcagatgagaactataatgga
gtctcggatgtggaattgagaatagccatgccagacaaaaccacagtgaccgtccgggtt
cgaaagaattgcacaacagatcaggtttaccaggctgtggtgatgaagctcgggatggac
agtattaccgccagttactttgctctctttgaagtcatcaaccactccttcgtgcgcaag
ctggctccgaacgagttcccgcataagttgtacgtgcagaactacacgtcggccgtgccc
ggtacctgcctgaccttgcgcaagtggctcttcacaactgaggaggagttcctgcttaac
gacaacgaactcgccatcaactattgctttcaccaggctctagatgatgtcaagaggggc
gtcattaaagctgaggacaaatcataccagctccagaaactgtctgaacagaggaagatt
tctatgtatctgagtatggtgaggacatgcgagggctacaatgagatcatcttccctcac
tgcgcttgtgactcacgccggaaaggccaggtcatcacagccatcagcatccaccacttc
aaactacacgcttgcacagaggaaggcaccttagagaatcaggtgatcgcgttcgattgg
gccgagatgcagagatgggacacagacgaggagggtatggctttctgctttgagtatgcg
cgaggcgagaagaagccacgctgggtcaagatctttactccatattttaactacatgcac
gagtgcttcgagcgagtcttctgtgaacttaaatggagaaaagaggttgaagaggaggtg
atggataaggacaataagaactgcagtaaagatgaatatcttccagctgttgagacacag
aagggatggaggaacctgagacaggagatcgtcaccccctga
DBGET
integrated database retrieval system
