Trichomycterus rosablanca: 134309908
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Entry
134309908 CDS
T09921
Symbol
arid1aa
Name
(RefSeq) AT-rich interactive domain-containing protein 1A isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
134309908 (arid1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
trn03000
]
134309908 (arid1aa)
03021 Transcription machinery [BR:
trn03021
]
134309908 (arid1aa)
03036 Chromosome and associated proteins [BR:
trn03036
]
134309908 (arid1aa)
Transcription factors [BR:
trn03000
]
Eukaryotic type
Helix-turn-helix
ARID
134309908 (arid1aa)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
134309908 (arid1aa)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
134309908 (arid1aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
134309908
NCBI-ProteinID:
XP_062847410
LinkDB
All DBs
Position
3:44028377..44066301
Genome browser
AA seq
2232 aa
AA seq
DB search
MAAQVASATSLNSSSPSELKKADRDPKEESVPAEKQQENKEPGSESGSPGRGGELHDRPE
PGNAMAAGGGESEMKNGNPPRLPNNQNDSTGPEANNHPGMAHQHQPSGFAPPSYGYAHHY
SRGPFHQHGGQQSPGMAAAAPSNMMEPYGPNSHEHGFPNHQFNNYGQFPNRAPYPGPGYG
MSSPRSAPAQAAQAAKQQQQQQQAAGGSPTMAASYNNQRYNIANPQAASTPTLNQLLTSP
SSNRGYSNYQPSDYNNQEGANKGDINPAAAQYAGGHPGWQQRTHLPSPMSPGSTAQSLGR
NQTPGSLDQMGKMRGQPYGSSSPYSQQPHQGPPGGQQGTAYPGQAFGSTGPQRYPIGMQG
RMQYGQQMGYGQQGPGSYGQQGQQPYYGQQGPGPHPGQQQSPYPQPPPQSTPHAQGGHPY
PQPHTPQQSQGPMGAPPQGPAQNQQSPYPQPPASQSTQSPYPQQQAPQTQPPPQGASQAP
PVSQAQPSYTPSQQSPSQQIPQVPTSASQQPSAQGQPSSYSQNASQQQQSSYPRFPPPPP
QEISQESFSSQPSSAPSSQPVASTKSSSEEMQGRPSSLPDLSGSIDDLPTGTEGALSPGV
STPGVSSSQGEQSNPAQSPFSPHTSPHLPGIRGPSPSPVGSPASASASRSGPLSPATMPG
NQMPSRPPSGQSDGILHPGMNQPGLGQDRGFMQRNQMPPYGSPQSGSALSPRQSSGVQMH
SGMGPFQQNNSMSGFGPQGGQYGPQGYPRQPGYSGMPNANYSGPGMGGSMSPMSGQGGGP
PFAGMPPNRMPHGQMGVRPYGPNMGPNMGPNMGNMPPQVGSGMCPPPALNRKQQETAAMQ
HGSTNSIHTRMPGYPNMSPGMMGSGPPYGPSLNNMPGMMNTQGPPYSMGGNMPNNSGMSP
GPEFGMDGKLNQAQKINNKVEGTPKTESKSKKSSSSTTTNEKITRLYELGSEPERKMWVD
RYLAFVEEKAMGMTNLPAVGRKPLDLFRLYMCVKEIGGLTQVNKNKKWRELATSLNVGTS
SSAASSLKKQYIQCLYAFECKIERGEDPPPDIMSTETKKNQAKVQPPSPAGSGSLQGPQT
PQSTSSSMAESGDLKPPTPASTPHSQMPPMQSGRSSVNLQDPFADSSDPAFSRRNAMTPN
SGYQSGMSTPEMPGRMGPYEPNKDPFSGMRKVGESFMPGGQGPNSTMGEQFNRGNMPIGQ
RQQYTYGPNYDRRPESGMGPESNMGPGVPQPNMMPSNTDTGMYSPNRYPSQQQRHESYGN
QYPGQGAPPGGSYPNQQPGMFPQQQANYKRPVEGGYPPAKRHHDGEMYGGPFGGQQPQQQ
SPAPPTGPSSTQPEMYNQYGGSYPGPERRPPGAQNQFPFSFGRDRIQPGSGPNSQGSMPT
QIMSSSMQPGPDGPQAGMWQSRGEMGYPNYPNRQGPLGGPAQGPGYHGMNRSEDMMSSEP
RMNHEGQWPGSRQPPYGPAGAGPPMSRPLQSNYQPPQAMQNHIPQVSSPTPMVRPIESRT
SPSKSPYMHSNIKMQKAGPPVPASHIMPASGQPPMLRRDPPFPPGSVEATQPLLKPRRRL
TMKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDNSIANFNLAQLPGFLELIVEY
YRRCLIEIFGILREYEVGDPGQRTLLDPNALKDEENNELEEETMAAAMEDDDETEEEGDE
DENSSQLVERVAAAQSEKTTESKKDENKKEIPTEPKTSEPPSADASVTQERPKQASKFDR
LPVKVVKKKDPFVVDCCNKLGRLQKFDSGLVHWSIGGGDTTEHIQTYFESKVDLLQLKQT
RPVQTCKRKEVSEKQAETEAPIEPSCNVDQSKEEDQTQTLPSSTRQPTEDVSDVKKEKPA
NGPETSLEPVSDKEKEEAQTEETNQETSKPVLPSITTSQHSVLEDEPHSKDEAPLITLSE
WQDSLARRCICVSNIVRSLSFVPGNDLEMSKHPGLLLLLGRLVLLHHRHPERKQAPLTYE
KEEEADKEVSHKNEWWWDCLELLRENCLVTLANISGQLDFSIYSESICLPLLDGLLHWAV
CPSAEAQDPFPTLGLNAALSPQRLVLETLSKLSIQDNNVDLILATPPFSRLEKLFGNLVR
LVGERKVPVCREMAVVLLANLAQGDSLAARAIAVQKGSIGNLLSFLEDSLAATQFQQSQG
SLLHMQGAHFEPTSVDMMRRAARALHALAKVEENHSEFTLYESRLLDISTSPLMNSSVSH
VICDVLFLIGQS
NT seq
6699 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgctagcgctacctctctcaacagcagctcgccttccgagctcaaa
aaagcggaccgagacccaaaggaggagtcggtaccggccgagaagcagcaggaaaataag
gagccgggatctgagagtggatcaccgggccgcggcggcgaactgcatgaccggcccgag
cctggcaatgctatggcagcaggaggaggggagtccgagatgaaaaacggcaatcctccg
cggctccccaataatcaaaatgattcgaccggacccgaagcgaataaccacccgggcatg
gcgcaccagcaccagccgtccggatttgcgccgccgtcctacggctacgcgcaccactac
tcacggggcccttttcatcaacatggcggacaacaaagccctggcatggcagccgcggcg
cccagcaacatgatggagccgtatggaccgaactcgcacgagcacggctttccgaaccac
cagtttaacaactatgggcagtttccgaaccgggcgccttatccgggcccgggctatgga
atgagttcgccgcgcagcgctccggctcaggcggctcaggcggctaaacagcagcagcag
cagcagcaggcagcgggaggatctcccactatggccgcgtcatataataatcagcgttat
aatattgcaaatccacaagctgcatcgacaccgactctcaaccagctcctaacgtcgccg
agctccaaccgcggctacagtaattaccaaccgagcgactacaacaaccaggaaggcgct
aacaagggagatatcaatcctgctgctgcccagtacgcaggcggccatccgggctggcaa
caaagaacccatctcccctctccaatgagcccgggaagcacggctcagagtctgggtaga
aaccagacaccaggctccttggatcagatggggaagatgcgtggtcagccatatggatca
agcagcccatactcacagcagccccaccaaggacctccagggggccagcaagggactgca
tatccaggccaggcctttggctctactggtcctcaaagataccccataggcatgcaagga
cgcatgcagtatggtcaacagatgggatatggacagcagggaccaggcagttatgggcag
caggggcaacagccctattatgggcagcaaggtccgggccctcacccgggtcagcagcag
tcaccgtatccacagcctccaccgcaatctacccctcacgctcagggtggacatccctac
ccacagccacacacgccccagcagtctcaagggccaatgggtgcacctccacagggccca
gcccaaaatcaacagagtccctaccctcagcctcctgcatcacagtccactcagtcccca
taccctcagcagcaagccccccagacccagcctcctccgcagggtgcctctcaggctcct
ccagtgtcacaagctcagcccagctacacacccagccagcaatctccatctcagcagatc
ccacaagtaccaacgtcagcctcacagcagccctcagcgcaggggcagccgtcatcatac
tcccagaatgcttcgcaacagcagcagtcttcttatccacgatttcctcctccacctcct
caggagatttcccaggagtcttttagctcacagcccagtagtgctccttccagtcagcca
gtagcctccactaagagctcatctgaggaaatgcaaggacgaccctccagtctacctgac
ctgtcaggctctattgatgacctgcccactggtacagagggagcgctcagtcctggtgtc
agcacgcctggagtgtctagcagtcagggtgaacagagcaaccctgcacagtcgccattt
tccccacacacctcgcctcacctgcccggcatcaggggcccctcaccctcccctgtcggc
tcacccgctagcgcatcagcctcccgctcgggccccctatctccagcaaccatgccagga
aatcagatgccttctcgtccccctagtggtcagtctgatggtattttgcaccctggtatg
aatcagcctggcttgggccaggacagaggatttatgcaaagaaaccaaatgccaccttac
ggctctcctcagtctggctccgccctgtcgcctcgccagtcgtctggagttcaaatgcat
agcggaatggggccttttcagcagaataactcaatgagtggatttgggcctcagggtggc
caatatggcccacaaggttaccccaggcaacctggctacagtggtatgcccaatgctaac
tactcaggccctggcatgggtggatctatgagccccatgtctggacagggaggagggcca
ccgtttgctggaatgccacctaatagaatgccacatggacagatgggtgtacgaccttat
ggacctaacatggggcccaacatggggcctaatatgggcaacatgccccctcaggtggga
tctgggatgtgcccaccaccagccctcaacaggaagcagcaagaaacagcagccatgcaa
catggatccacaaattcaatacataccagaatgcctggttatcccaacatgtctcccggt
atgatgggctcaggacctccatacgggccctccttgaataacatgccaggaatgatgaac
acccaaggaccaccatattctatgggtggaaacatgccaaacaacagtgggatgtcccct
ggtccagaatttggcatggatgggaaactgaaccaagcacagaagataaacaacaaggtt
gagggaacacccaagacagagtccaaatcaaagaagtccagttcttctactactaccaac
gaaaagatcacacgtctgtatgagctaggttctgaaccagaacgcaagatgtgggtggac
cgctacctagcctttgttgaagaaaaagccatgggcatgaccaacctgccagctgtaggc
cgcaaaccactcgatctgttccgtctctacatgtgtgttaaggagattggtggtcttaca
caggtaaataaaaataaaaagtggagggagcttgcaacaagcctgaatgttggcacatcc
agtagtgcagccagctcactaaagaagcagtacattcagtgtttgtatgctttcgaatgc
aaaatcgagcgtggagaagatccaccacctgacatcatgtcaacagagaccaaaaagaac
caagctaaggtccagccaccttctccagctggatctggttccctgcagggacctcagaca
ccccagtccacaagcagttccatggctgagagtggggacctgaaacctcctactcctgct
tccacgccacatagccaaatgcccccaatgcaaagtggcaggagcagtgtgaaccttcag
gatccatttgctgacagcagtgacccagctttctctaggagaaacgctatgacccccaac
tcaggctaccagtctgggatgagcactccagagatgcctggccgcatgggtccatatgaa
ccgaacaaggatccgtttagtggtatgcgtaaagttggagagtcattcatgcctggagga
cagggacctaatagcacaatgggagagcaatttaatcgtggaaatatgcccattggacag
agacagcagtatacatatgggccaaactacgacagaaggccagaatcagggatgggccca
gaaagcaatatggggcctggtgttccacagccaaacatgatgccttcaaacactgacact
gggatgtactcaccgaatcgctacccttcacagcaacagaggcacgaatcctatggcaat
cagtatcctggccagggggcgcctcctggtggctcatatccaaatcagcaaccagggatg
tttccacagcaacaggcaaactacaaaagaccagttgaaggaggataccctccagcaaag
cgccatcacgatggagagatgtatggcgggccttttggtggccagcagccacagcagcag
tctccagctcctcctaccggtccttcatccactcagccagagatgtacaaccagtatggc
ggctcctacccgggtccagaacgccggccccctggagcacaaaaccagttccctttttct
tttggaagagatcggatacagcctggctcaggtccaaactcccaaggttcaatgcccact
caaataatgagcagctctatgcagcctggacccgacggcccacaggctggcatgtggcag
agccggggtgagatgggttaccccaactatccgaacaggcaaggacctcttggaggaccc
gcgcagggcccgggataccacggcatgaatcgatccgaagatatgatgtcgtctgagccg
cgtatgaaccacgaaggacagtggccaggatcaagacagccgccatatggcccagcagga
gccggtccacccatgagccgacctctccagtccaactaccagcctcctcaagccatgcag
aaccacattccacaggtgtccagcccaacgcccatggtcaggcccattgagagcaggacc
tcccccagtaaatctccttatatgcacagcaacatcaagatgcagaaggcagggccacca
gtgccagcgtcccacatcatgcctgcatcggggcaacccccgatgttaagaagagaccct
ccattccctccaggctctgtggaggccacacagcctcttctcaagcctcgcagacggctt
accatgaaagatataggtactccagaggcatggcgggttatgatgtctctaaaatcaggt
ttgttggctgaaagcacatgggctttagacaccatcaacatcctgctgtatgatgacaac
agtattgccaattttaaccttgctcagctcccaggcttcttggaactaatagtggagtat
tacagacgttgccttattgagatctttggcattctaagagaatatgaagttggtgatcca
ggacagagaactctattggaccctaatgctcttaaagatgaagagaataacgagctcgag
gaagagaccatggcggcagccatggaagacgatgatgaaacagaagaggagggtgacgaa
gatgaaaactcatctcagcttgtggaacgtgtggcagcagcacagtcagaaaaaacgacc
gaatcgaagaaagacgagaataaaaaggagatacccacagagcccaaaacatcagagcca
ccctctgctgatgctagtgtcactcaggaaagaccaaaacaggccagcaaatttgacagg
cttcccgtgaaggtggtgaaaaagaaggatccttttgttgtggattgttgtaacaagctt
gggcggcttcagaagtttgacagtggtctggtgcactggagtattggtggtggagataca
acagagcacattcaaacttattttgagagcaaagtggatcttttgcagctgaagcagaca
cggcctgtccagacatgtaaaaggaaggaagtgtctgagaagcaagcagagacagaggca
ccgatagaaccctcatgtaatgtggatcaaagtaaagaggaggaccagacgcaaactctg
ccatcctcaacaagacaaccaacagaagatgtttcagatgtgaagaaggagaaacctgct
aatggccctgaaacatccttggaaccagtatcggataaagaaaaggaggaggcacagaca
gaggaaaccaaccaggagacgagcaagcctgttcttcccagcataaccacctctcagcac
tctgtattagaggatgaacctcacagcaaggacgaagccccactaattacgctttcagaa
tggcaggactcgcttgcccgccgctgcatatgcgtctccaacattgtccgcagtctttca
ttcgtccctggaaatgacttggagatgtccaaacatccagggttgctgctgctactgggc
cgcctcgtgctgcttcatcatcggcaccccgagcgtaaacaggcaccattgacatacgaa
aaagaagaggaagcggacaaggaagtaagccacaagaacgaatggtggtgggactgcctg
gagctgctgcgagagaactgcctggtcaccctggccaacatctcaggtcagctggacttt
tctatctattcggagagtatctgccttcctctgctcgacggcctgctccactgggccgtt
tgtccttcggcagaagcacaggatcccttccccactcttgggcttaatgcagccttatct
cctcagagactggttttggagactctcagcaaactcagtatacaggacaataacgtggac
ctcattttagcaacccctccctttagtcgactagaaaagctttttgggaatcttgtacgc
ctggtcggagaacgaaaggtgcctgtatgtcgagagatggcagttgtactcttggccaac
cttgcccagggtgacagcctagcagcccgtgccattgcggtacaaaagggcagcatagga
aaccttttgagcttccttgaggacagtttagcagccacacagttccagcagagccaaggg
tccctgttgcacatgcagggggcacacttcgaacccactagcgtggacatgatgcgtcgg
gctgctcgggctctacacgcccttgctaaggtggaggagaaccactctgagtttacgctt
tacgagtcacggctactggacatctccacctcacctcttatgaactcctcagtgtctcat
gtcatctgtgatgtactctttttgattggccagtcatga
DBGET
integrated database retrieval system
