Trichomycterus rosablanca: 134309944
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Entry
134309944 CDS
T09921
Symbol
vim
Name
(RefSeq) vimentin
KO
K07606
vimentin
Organism
trn
Trichomycterus rosablanca
Pathway
trn04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
134309944 (vim)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134309944 (vim)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
trn04812
]
134309944 (vim)
04147 Exosome [BR:
trn04147
]
134309944 (vim)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Factors that have mRNA localization signals
134309944 (vim)
Cytoskeleton proteins [BR:
trn04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
134309944 (vim)
Exosome [BR:
trn04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
134309944 (vim)
Exosomal proteins of other cancer cells
134309944 (vim)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filament
Filament_head
TPR_MLP1_2
TolA_bind_tri
CENP-F_leu_zip
YwqH-like
DUF1664
CCDC144C
Motif
Other DBs
NCBI-GeneID:
134309944
NCBI-ProteinID:
XP_062847480
LinkDB
All DBs
Position
3:complement(49253659..49267635)
Genome browser
AA seq
465 aa
AA seq
DB search
MSYRPSSSRQASSYSRLFGGERPPSSVRSGYTTRQYSGSVRPPRLSYSALSAPASISAGS
KISRVRSNAPLPRLTSGPLDFSLSDAINTEFKTNRTNEKAQMQQLNDRFASYIEKVRFLE
QQNKMLNAELEQTRANGTSRLGELYEEEMRELRQQVDQLNNDKARVQVDRDNLAEDVERL
REKLQEEILQKEDAENNLQSFRHDVDNASLARLDLERKIESLQDEISFLKKLHDEEITEL
QTQIQDQHVQIDMDIAKPDLTAALRDVRLQYETLTTKNIQEAEEWYKSKFVDLSEAAARN
SDAIRQAKQDANDYRRQVQALTCELDALKGTNESLERQMRELEDNFSGEASVYQETISHM
EEDIHNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPIPNFSLINLRE
TMVESRPASNPTKKVVIKTIETRDGHVINESTQHHEDLERTFMNE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacagaccgagctcctctcgccaggcctcctcctacagcagactgtttggtggt
gaacgacctccctcctcggttcggtccggctacaccactcggcagtattcgggttcggtg
cgccccccgcgtctctcctacagcgcactatccgctccagcgtccatcagcgccggcagc
aagatctcccgagtgcgcagtaatgctcctctccccagactcacatcaggtccgctggat
ttcagcctgtccgatgccatcaacaccgagttcaagaccaaccggacgaacgagaaagct
cagatgcagcagctgaacgatcgcttcgccagctatatcgagaaggtgcgttttctggag
cagcagaacaagatgctgaatgcagagctggagcagaccagggctaatggaacatctcga
ctgggagaactgtacgaggaggagatgagagaactgcgccagcaagtggatcagctcaac
aacgacaaggccagagtccaggtggaccgagataatctggctgaggatgttgagcgtctc
agagagaagcttcaagaagaaatccttcaaaaagaagatgctgaaaacaatctccagagc
ttcagacatgacgtggataatgcttccctggctcgtctagacctagagcgcaagattgaa
tctctgcaggacgaaatcagtttcctcaagaagctccatgatgaggagattactgagctg
cagacacaaatccaggatcagcatgtgcagatcgacatggacattgctaagcctgatctg
accgcggcgttacgggacgtccgtctacagtacgagactctgaccactaagaacattcaa
gaggctgaagaatggtacaaatccaagtttgttgatttgtctgaggctgccgcccgtaac
agtgatgccatccgtcaggccaaacaggacgccaatgactaccggcgccaagtgcaagct
ttgacctgtgagctcgatgctcttaaaggcactaatgagtctctggagcgccagatgagg
gaactagaggacaacttcagcggagaggcatctgtttatcaggagaccatcagccacatg
gaagaagacatccacaacatgaaggatgaaatggctcgtcacctgcgcgagtaccaggac
cttctcaatgtcaaaatggccctggacatcgagatagccacctacagaaaactgttggag
ggtgaggaaagcaggattaccacacctatacccaacttctccttgattaatctgagagaa
accatggtagagagcagaccagcatccaacccgaccaagaaggtggtgattaagactata
gaaaccagagatggtcatgttattaatgagtcgactcagcaccatgaagacctggagagg
acgtttatgaatgaatga
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