Trichomycterus rosablanca: 134310236
Help
Entry
134310236 CDS
T09921
Symbol
col14a1a
Name
(RefSeq) collagen alpha-1(XIV) chain
KO
K08133
collagen type XIV alpha
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
trn00535
]
134310236 (col14a1a)
Proteoglycans [BR:
trn00535
]
Extracellular matrix (ECM) proteoglycans
Others
134310236 (col14a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
VWA_3
DUF4767
Motif
Other DBs
NCBI-GeneID:
134310236
NCBI-ProteinID:
XP_062847855
LinkDB
All DBs
Position
3:6769759..6943860
Genome browser
AA seq
1865 aa
AA seq
DB search
MLEGMQVVGSRMIAWWPLVFLALVQFPDSTKAQIPGPRRLRFKMMDSDKLHVSWKEPKGT
YDGYRLIYSSAPGGERNEIRIAKGENRAVINDFNPMKEYTVKVIAVSGKQQSKALQGTYT
AEFREVDGEITQPNRLKETLPTSGGPETLGADQFVCSTPAIADIVILVDGSWSIGRLNFR
LVRTFLENMVTAFDVGIDRTRIGLAQYSGDPRIEWHLNAFPTKEAVIDAVKNLPYKGGNT
LTGLALTYMLKNSFKPESGSRSNVPKIGILVTDGKSQDAVGVPAQDLKDTGVELFAIGVK
NADENELKVIASEPDETHVYNVADFSIMNSIVEGLTRTVCKGVEQQDKEIRRDSVPEETV
GSPRDLVTSEVTARSFRVSWSHAPGSVEKYRVVYYPTKGGSPEEVVVDGTESTAVLTNLN
SQTEYEIAVFSVYTTSASEALRGSETTLALPIVEDLELYDLTPTTMQARWKAVEGASGYM
VLYAPLSSETTEETEVKVDATVTDMTLVNLNPDTEYTVTVYGMFGDEASDPATVQETTLP
LRPPRNLRVTEVDHNSVRLNWDAPSNAVKGYQVMYVKNDDVQTNEVNMGPVTNVYLKDLA
SQTNYTVAVFALYDAGQAEALDGSFTTKLVPAPRNLRINEVMPDSFRVSWTQPADGVELY
KLAWRAYGGGDMKEVILSGDMDSYEVDSLSPLTEYKVLLSAIYRDTAESSATVALETTLA
MPATTAFPSTTPPVTRLGLTDLLVDDETTHSLQVSWEIQDTDVEQYRVTYVSQRGDRAEE
SVLVPGHEKTVLLQPLLSDTEYKITVHPVYPDGEGSALSMSSSGRTLPLLAPENLRVSEE
WYNRFRLTWDTPASPTMGYRIIYQPTLVTGPALETFVGEDVNTLLMLNLLPSTEYSVKVI
ASYTTGSSEPLSGTAKTMFLGVGRLRTYQVQSNNMCAQWQPVSQASLYRVIIESLFNGQQ
QEMSVSGGASRQCFSNLTPNTQYKISVYTQLQEMEGPAVTVMDTTLPVPTQPPTEPPTTP
PPPTVPSAKEVCKAAKADLVFLVDGSWSIGDDNFQKIIHFLYSTTGALDVIGPEGTQVAI
VQFSDDARTEFMLSSYKDKESLLGAVQRITYKGGNTKTGRAIKHVKENIFTEEAGVRRGI
PKVLVVLTDGRSQDDVNKISKDMQMEGYIIFAIGFADADYGELVNIASKPSEKHVFFVDD
LDAVKKIEEQLITFVCEAATATCPSVLMSGNTLAGFRMMERFGLVEKQYSSVQGVSMEPG
TFNSFPCYRLHKDALVSQPTKYLHPEGLPSDYTITVLFRILPETPQKPFALWEIRNKDNE
PLVGIILDNEGKTLTFFNYDYKADFQTVTFEGPDIKKIFYGSFHKLHVAVSKTAAKVVID
CKTVGEKPINAAGNITTDGLEVLGRMVHSREKRDNSAPFQLQMFDIVCSTSWASRDKCCE
LPGLRVEQDCPALPHSCTCSQDSKGPPGPSGPPGGPGIRGTRGDRGEPGTVGSQGSAGEI
GPPGPQGPPGPQGPSGLSIQGPPGSPGQKGEKGDPGLLGPQGMPGAPGGPGRDGPPGQRG
LPGKDGPQGQQGQTGPIGSPGSPGAPGTTGPSGKQGDHGPPGLPGTKGERGERGDMQSQA
TVRSIARQVCEQLIQSHLSRYNSILNQIPSHPVSIRTVAGPPGEAGRQGLPGQQGEQGPP
GRPGFPGSNGLSGQPGERGLSGEKGDKGSPGVGTQGPRGPPGPPGPSGEGRTGNQGPPGR
PGNQGTPGRPGSPGSTGPAGPPGYCDQNSCLGYNVGVQQLPPSTYQNQGPTNTNNEEDEE
EDPYDEYQRYPPQYYQPNYPDPRGAQPGNAYPSAMRGLGMHRYSRSLRERSATQNTIQTE
DESAQ
NT seq
5598 nt
NT seq
+upstream
nt +downstream
nt
atgttggaaggaatgcaggtggttgggtcgagaatgatcgcgtggtggccgctggtcttc
ctggcactggtgcagtttccggactctacaaaagcacagattccaggcccacgaagacta
agatttaaaatgatggattctgacaagttacatgtgtcatggaaagagcctaagggaaca
tatgacggctatagacttatctacagcagtgctccaggtggagagcggaatgagattcga
atcgcaaagggtgagaacagagcggtaataaatgacttcaatcccatgaaggagtacaca
gtcaaggttatagctgtgagcggaaaacagcaaagcaaagcacttcaagggacctacaca
gctgagtttcgggaggttgatggagagatcacccaaccaaacagattaaaagaaaccttg
ccaacatcgggcggccctgagacgttaggagcagaccagtttgtgtgcagcactcctgcg
atcgcagatattgtcatcctggtagatggctcctggagtatcggcaggcttaatttccgc
ctggtgcggacgtttcttgaaaatatggttactgcttttgatgtgggaattgacagaaca
cgtatcggactggcccagtacagcggagatcccaggattgaatggcacctcaatgcattt
cctaccaaagaagccgtgattgatgctgtcaaaaacctgccatacaaaggaggaaacaca
ctcacaggcttggctcttacatacatgctcaaaaacagcttcaaacctgaatctggatct
cggagtaacgttcctaaaattgggatcctggtcaccgatggcaaatcgcaggatgctgtc
ggcgttcctgcacaagacctgaaggacactggtgttgagctttttgccattggtgtaaag
aacgctgatgaaaacgagctgaaggtgattgcatctgagccagatgaaacccatgtttac
aacgtggctgacttcagcatcatgaattctatagtggagggtctgactaggactgtgtgc
aaaggtgtggagcaacaggacaaagagatcagaagggattcagtccctgaagagactgtg
ggctctcctagggatttggtaacttcagaagtaacagcacggagtttccgtgtctcctgg
agccatgcgcccggcagcgtggagaagtaccgggtggtttactatcctacaaaaggaggt
tccccagaagaggtcgtcgtggatggcacagagagcacagccgtgctgacaaacctcaac
tcccagactgagtatgagattgctgtgttttctgtgtacacaacctcagccagtgaagct
ctcaggggcagcgagaccacactggctctacctattgttgaggatttggagctgtatgat
ctaacacccaccaccatgcaggctcgatggaaggctgtagaaggggcttctgggtacatg
gttctgtacgcacctctaagcagtgaaactactgaagaaacagaggttaaagtagacgcc
acggtgactgacatgacgctggtgaatttaaatccagacacagagtacacagtaacagtc
tacggcatgttcggagacgaggccagcgaccccgctacagtgcaggagaccacattgcct
ctgaggcctcctcgtaacctacgtgtcactgaggtcgaccacaactctgtaaggctcaac
tgggacgcaccgtcaaatgcagtcaagggctatcaagtgatgtatgtcaaaaatgatgat
gtccagactaatgaggtaaacatgggtccggtcactaacgtgtacctgaaggacctggca
tcccaaaccaattacacagtagctgtgtttgctctgtatgatgcaggccaagcagaagcc
ctggatggaagcttcaccacgaaactcgttccagcaccgcggaacctcaggatcaatgaa
gtgatgccagatagcttccgggtgagctggacgcagcctgcggatggtgtggagctttat
aaactcgcctggagagcctatggaggaggagacatgaaagaggtgatcctttcaggcgac
atggactcctacgaggtggacagcctttcccccctcactgagtataaggtgctgctgtct
gccatctacagagacacggctgagagcagtgctacagttgcactggagaccacattggcg
atgcctgccacgacagccttcccctcaacgaccccaccagtgactcggctgggattaacc
gacctgctggtggacgatgagaccacgcacagtctgcaggtcagctgggaaatacaggac
acagatgtcgagcagtacagagtgacctacgtcagccagaggggggaccgagccgaggag
tcggtgctggtcccaggtcatgaaaagactgtgctgttacaaccactgctctcagacaca
gagtacaaaataacggttcatcctgtttatcctgacggagagggcagtgcactctccatg
tcctcttctggacggacattaccactgctggcacctgagaacctccgggtatctgaggaa
tggtacaaccgatttcgcctcacctgggacacacctgcctctccgaccatgggctacaga
atcatctatcagcccaccttggtgacgggtcctgctctggagacgtttgtaggtgaagat
gtaaacacactgttgatgttgaatctgctacccagcacagaatacagcgttaaggtcatc
gcttcatacaccaccggctccagcgaacctctctcaggcaccgccaagacaatgtttctg
ggagttggtagactcagaacataccaggtgcagagcaacaacatgtgtgcacagtggcaa
cctgtcagtcaggcgtccctctacagggtcatcatcgagtccctgttcaatggccagcaa
caggagatgagtgtgagtggtggagcctccaggcaatgtttctccaacctgacacctaac
acacagtacaagatcagcgtctacacacagctgcaggaaatggagggtccagccgtcacc
gtcatggacacaacacttccagttccaacccaaccacctaccgaacccccgaccactcct
cctccacccaccgtaccatcggccaaagaagtttgtaaagcagccaaagcagacctggtg
ttcctggtggatggatcctggagtataggcgatgacaacttccagaagatcatccacttc
ttgtacagcacaactggtgcgctcgatgtcattgggcctgaaggaacacaggtggccatt
gttcagttcagcgatgatgccagaactgaattcatgctgagctcctataaggataaagaa
tccctgctgggtgcagtgcagcgcatcacttataaaggaggaaacaccaaaacaggtcga
gccattaagcatgtgaaggagaacatctttacagaggaggctggtgtaaggagaggaatc
cccaaagtgctggtggtgctcacagatggtcgctcacaggacgacgttaacaagatctcc
aaagacatgcagatggagggttacatcatttttgccatcggctttgctgacgcggattac
ggagagctggtgaacattgccagcaaacccagtgagaaacacgttttctttgtggacgac
ctggatgctgtcaagaaaattgaggagcagctcataacatttgtgtgtgaggcagcaaca
gccacgtgtccctcggtgctgatgagtgggaacaccctagcaggctttcggatgatggag
aggtttggattggtggagaagcagtacagtagcgtacagggtgtttctatggagccggga
actttcaacagcttcccctgctacagactgcacaaggacgctctcgtctcacagccgacc
aaatatctgcaccctgagggacttccttctgattacaccatcacagtgctgttccgcatc
ctgccggaaactcctcagaagccttttgctttgtgggaaattcgcaataaagacaatgaa
cccctggtgggcatcatattagacaatgaaggaaaaaccttgaccttctttaactacgac
tacaaggcagatttccagacggtgaccttcgaaggacctgacatcaagaagatcttttat
ggcagtttccataagcttcatgtggcagttagcaagactgcagcgaaggtggtgatagac
tgtaagactgtgggagaaaagcccatcaacgccgctgggaacatcaccacagacggactg
gaagttctgggcagaatggtgcactcacgcgaaaagagggacaactcagcaccgtttcag
ctgcagatgttcgatatcgtgtgtagtacatcgtgggccagtcgagataaatgctgtgag
cttccaggcctgagagtagagcaagactgtccggctcttccacattcctgcacctgctcc
caggacagcaaaggaccaccgggaccctctggacccccaggcggtcctggtataagaggt
acaagaggtgaccggggggaaccaggcacagtggggtctcaagggtcagctggtgagatt
gggcctccaggacctcagggacctcctggaccacagggacctagtggactctctatccag
gggccaccaggatctccaggacagaagggagagaaaggtgacccaggtctgctgggtcct
cagggcatgccaggagcccctggaggaccaggtagagatggcccaccaggacagaggggt
ttgcctggaaaggatggaccacaaggacaacagggccagacaggtcctattggcagtcct
ggttctcccggagctccaggaaccacggggccatcaggaaaacagggtgatcacggccca
cctggccttcctggcaccaagggcgagcgaggagaaaggggtgacatgcagtctcaggca
acggttcgatccatagctcgacaagtgtgtgaacagttaattcagagccatttatctcgc
tacaactccatcctgaatcagatccccagtcatcctgtgtcaatacggacagtggcaggt
cctccaggagaagcaggccgtcagggccttccagggcaacagggagagcaagggcctcca
ggcagaccgggcttccctggatcaaatggactgagtggccaaccaggcgagagaggtctg
tcaggagagaaaggtgacaaaggaagtccaggtgtgggaacacagggtccccgtggaccc
ccaggacccccagggccttcaggcgaaggcaggacaggcaaccaaggtcctccaggcagg
ccaggcaatcagggaactccaggtcgccctggaagccctggctccaccggaccagcggga
ccaccaggctattgcgaccagaattcctgtttagggtacaacgtcggagtccaacagtta
cctcccagtacctaccaaaaccaggggcctaccaacactaacaatgaggaggatgaagag
gaggacccatacgatgaatatcaacgctacccaccccagtactatcaacccaactaccca
gaccctcgtggtgcacagcctggaaatgcctaccccagtgccatgaggggactaggcatg
catcgctactctcgcagcctgagggaaagaagcgccactcagaacacaatacagacggaa
gacgagagtgcacaatga
DBGET
integrated database retrieval system
