Trichomycterus rosablanca: 134310931
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Entry
134310931 CDS
T09921
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
134310931 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
trn01009
]
134310931 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134310931 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
trn03029
]
134310931 (rb1cc1)
Protein phosphatases and associated proteins [BR:
trn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134310931 (rb1cc1)
Membrane trafficking [BR:
trn04131
]
Autophagy
Autophagosome formation proteins
ULK complex
134310931 (rb1cc1)
Mitochondrial biogenesis [BR:
trn03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
134310931 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Globin
DUF6950
Motif
Other DBs
NCBI-GeneID:
134310931
NCBI-ProteinID:
XP_062848767
LinkDB
All DBs
Position
3:complement(12214610..12239923)
Genome browser
AA seq
1599 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTELAVQTVLDLKHAIQAKYKIATQHQVLVVNGGECMVAERRVC
SYSAGTDTNPIFLFNKEMILCDRAPTIPKTTFSIENKMEVKVEESLMMPAVFHTVASRTQ
LAMEMFEVAKKLCSFCEQLVHDEHLQHQGWAAIMANLDDCTTSYQKLLSKFSTAYTNYQQ
DFEDIKIKLTKLGTAVSVMAKVPLLECLTRHSYKECLEKSSSPHPRPEYDTDEEGGGETS
TQTAISRSREGQRNQKSPTSGEPMAQDRLVSSSGLKEALEEESQQEVQDKGDSPTFNVTL
LDWINVQDRPNDVEAVVRKCFDSINRLDPKIIQPFLTECQETITKLDNQNMKAIKGLEDR
LYALDQMIASCKKLVNEQKELAQGFLANQERAQNLKDTSVLPDLCLSHANQLMIMLTNHR
KLLDIKQKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELLERVRVVEA
LSTVPQMYCLAVVEVVRRKMFIKHYREWAIALVKDGKNLYEAEKVKRETFGKLFRKSFLR
NRLFRGLDSWPPSSFCTRKPRRFDFELPDITLTDLQYLKTCCPAEVQPYLRTPSICDFEH
LNRHTETLQQLVQEARSVDEMSQTITDLLSELKVSGSQSAQRSSSESRTETTPTSSKTPP
PLSLQSPSCRAVSLPAPLEDLSPDSIDAHTFDFETIGHPNMDPNVIQQGSLDLDSLVESP
ESDFMSAVNEFVIEENITSPNPVSDPTSPEMMVESLYSSVINAIDSKRMQDTTMLERENS
RICTLKMTVDKYKSAAEESQSSLRTVKDDFCHFRGLILKEQRDFGFAMKKFSAEVHGVVD
NVRCSLQEELTETHQNELRNLKEDHEKQILRLTEELEGNRNIVRDVQRAMLELEGLVERK
EKDLAQMEGERERLLQDLRSTHHQAIQELERKLSEQTDALRDALLCKDSLASQLESLHVE
IERGQQKIRQELQNAEKSHLHELEARLKQEHQAQLESLKQATQSALDALSQENQAKLKEL
MVSHSEERKTQEARFKDYEARITELADARCKLEVEMALKETEMEDLTLQYEEAKNQQAET
LEAEMESQTSVLREQVETLTRQLQKKNEEQEQGLAELRALMRLEKDHCISELVDGHEKES
TLLRHEFSELKQKSQDAEKDCEERLLEVQHQQEDQLKALQKELKEKQRNFEEKEQDLITT
ISDLQAENTLLSGQLERERREAQMRVEEAAKTMLNDALRDVELKEEELETRVFGGFKLLE
DQLEGRQSADKVGDAGDSEVLESALQQRFDRERASLLDRLELLVKRKNEEMQNMKTSLIA
EQQMNFNTVLTREKRKKEQIINELNEKLKMLTEQQEQDKSLIESLTEDRASILREKKHLE
EELNRIRSSALVSSAYFVPNPMTVPVETPGACGPAPAEVPALSALDTERLMSVATLRTDD
RIDSAVEASMMTVHDNTLMLSEEKQRILMLERTLHMKEEENKRLSQRLMSQSMSSVSSRH
SEKIAIREFQVGDLVLIILDERHDNYVLFTVGPTLYFLHSESLGPLDLKPATGSTRRPWV
LGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNKKV
NT seq
4800 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaataatgggagcacgttgacatttgacaccgaactc
gcagtccaaactgtcttggaccttaaacatgccatccaggctaagtacaagattgccact
cagcaccaggtgctggtggttaatggtggcgagtgtatggtggcagagaggcgagtgtgc
agctacagtgccggcacggatacaaaccctatctttttgttcaacaaagagatgatcttg
tgtgaccgggcacccacgatccccaaaaccaccttctcaatcgagaacaagatggaagtg
aaggtggaggagtcactcatgatgcctgctgtgtttcacacggtcgcctcacggactcaa
ctcgctatggaaatgtttgaagttgccaagaagctttgctcgttctgtgaacaactggtc
catgacgaacatcttcagcaccagggctgggctgccatcatggccaacctagatgactgt
accacgtcctatcagaagctgctctccaaattcagcactgcatacactaattaccaacag
gattttgaagatattaaaataaagctaacaaagctcggaactgcggtttcagtcatggct
aaagtcccattgctggaatgcctgacccgccacagttacaaagaatgcctggagaaatcc
tcctccccccatcccagacctgagtatgacactgatgaggaaggaggtggggagacatcc
actcagactgccatctcacgctccagagagggtcagcggaaccagaaatctcccacatca
ggggaaccgatggctcaggacagattggtaagcagcagtggcttaaaagaggcgctggag
gaggaatcgcaacaggaggtgcaagataaaggagattctcctacatttaacgtcacactt
ttggactggatcaatgttcaggatcgacccaatgacgtggaggctgtagtgaggaaatgt
ttcgactccatcaatagacttgatccaaagattattcagccatttctcaccgagtgtcag
gaaacgattaccaaactggataatcagaacatgaaggccataaaggggcttgaagacaga
ttgtatgcactcgaccaaatgatcgccagctgcaaaaagctagtaaatgaacagaaggag
ctcgctcagggatttttggccaatcaggagagggctcaaaacctgaaggatacttcagtg
ctgccggacctgtgtttgagtcatgccaatcagctcatgatcatgctgaccaatcacaga
aagctgctggacatcaagcaaaagtgcacgactgccaaacaggaactggccaacaacctt
caagtccgactcaaatggtgctgctacgtgatgctgcatgcggatcaggatggtgagaag
ctgcaggcgctgctacgtctcttgaccgagctgctggaacgagtgcgtgtggtggaggct
ctaagcactgttcctcagatgtactgtctggctgtggttgaagtggtgcgcagaaagatg
tttattaaacactacagagagtgggccatcgccttggttaaagatgggaagaacctgtat
gaagcagaaaaggtcaaaagggaaacatttggcaaattgtttagaaagtcatttctcaga
aatcgcttatttcgaggacttgactcttggcctccctcatcattttgtactagaaagcct
cgcagatttgactttgagcttccagatataaccttgactgacctgcagtatctgaagacc
tgctgtcctgctgaagtgcagccttatctcaggactccatcaatatgtgactttgagcat
ttgaaccgacatacggagacgcttcagcagctagtgcaagaagcacggagtgtagatgaa
atgtcgcaaaccatcacagatttactaagcgagctgaaggtttccgggagccaaagtgca
cagagatccagctctgaaagccgaacagagaccacgcctacctcctccaaaaccccacct
cctctcagtctacagtctcctagctgtcgggcagtgtcccttccagcccccttggaggat
ttgtcccctgacagcatagatgcccacacgtttgactttgaaaccatagggcacccgaac
atggatcctaacgtgatacagcaagggtctttagatctggattctttggtggagagccca
gagtcagacttcatgtcagcagttaatgagttcgtcattgaggagaacattacatcaccc
aatccggtcagcgatcccacaagtccggagatgatggtcgagtctctttactcctcggtc
atcaatgccatagacagcaaacggatgcaggacaccaccatgctggaaagagagaactcc
cgaatctgtactcttaagatgaccgtagacaagtacaaatcggccgcagaggagtcacag
agcagtctgagaacagtaaaggatgacttctgccacttccggggactcattttaaaagag
caacgggactttggctttgcaatgaaaaagttcagcgctgaagttcatggtgtagtcgac
aatgtaaggtgcagtttgcaggaggaacttacagaaacgcaccaaaatgagctacggaac
ttaaaagaagaccatgagaagcagatcttgaggcttacagaggagttagaaggcaatcgc
aacattgtcagggacgtccagcgggctatgctggaactggaagggcttgtagagagaaag
gagaaggacctggcacagatggagggtgaacgggagcgtttgctacaggatttacgaagc
acccaccaccaggccatccaggaactagaaaggaaactttcagagcagactgatgcactc
cgggatgctttgctgtgtaaagactctcttgctagccagctggaaagcctgcatgttgaa
attgaacgtggccagcagaagatacggcaagaattgcaaaatgcagagaaaagtcatctc
catgagttggaagcccgtctgaaacaggagcaccaagcacaactggagtctttaaaacag
gccacccagagtgccctggatgccctgtcacaggaaaaccaggccaaactgaaggagctg
atggtgtctcactctgaagagcgtaagacccaagaggcccgctttaaagactacgaagct
cgcatcactgagcttgctgatgcccgctgcaaactcgaagtggagatggcactcaaagag
acagaaatggaagaccttaccttgcaatacgaggaagccaagaaccagcaagcagagacg
ctggaggctgagatggaatcccagacgtcggttttgcgggagcaagtggaaacactgacc
cggcagctgcagaagaagaacgaggagcaggagcagggtctggccgaactgcgggcgctc
atgcgccttgagaaggaccactgcatctcagaactggtagacgggcacgagaaggagagc
acgctgctgcgccacgagttctcagagctcaagcagaagtctcaagacgcagagaaggac
tgcgaggaacgcctgcttgaggttcagcaccagcaggaggaccagcttaaggccctacag
aaggagcttaaggagaagcagaggaattttgaggagaaggagcaggatttgataaccacc
attagtgacctgcaggcggagaacacacttttgtcaggacagctggagcgcgagcgtcgg
gaggctcagatgagagtagaggaggctgccaaaacaatgctaaatgatgccttaagggac
gtagagttaaaggaggaagagcttgaaacgagagtcttcggaggatttaaactacttgaa
gatcaacttgaaggaagacaatctgccgacaaagttggtgatgctggagacagtgaggtt
ctggaatcggcattacagcagaggtttgacagagaaagagcatcactcctggacaggctt
gagctgctggtgaagaggaagaatgaggagatgcagaacatgaagacctcgttaattgct
gagcagcagatgaattttaacactgtactaacacgtgaaaagaggaagaaggagcagatc
atcaatgaactaaatgagaagcttaagatgctgacagaacagcaggaacaagacaaaagc
ctgatcgaaagtctaactgaggaccgtgcctctatcctacgagagaaaaaacacctagag
gaggagctcaaccgcattagaagttctgccctggtgtcttctgcctactttgtgcccaat
cccatgactgttcctgtagagacacctggagcttgtggacccgcccctgcagaagtgccg
gctctgtctgcactggatacagagaggctgatgtctgtggctacactgcgaactgatgat
agaattgattctgctgttgaagccagcatgatgaccgtgcacgataacacattgatgcta
tcagaggagaagcagcgcatactgatgttggagcgaacgttgcacatgaaggaagaagag
aataaaagactcagtcaaagactgatgtcccaaagcatgtcctctgtgtcctccaggcat
tcagagaaaattgctattcgagagtttcaggttggagatttggtccttattattttagat
gagagacacgataattacgtgctcttcacggtaggacccacactctacttcctgcactcg
gagtctctcggcccactggacctcaagccagcaactgggagtaccaggcggccctgggtt
ctagggaaggtcatggagaaggaatattgccaggcaaaaaaggcccaaaaccgcttcaaa
gttcctctgggcaccaaattctaccgtgtaaaagccgtgccatggaataagaaagtgtaa
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integrated database retrieval system
