Trichomycterus rosablanca: 134311279
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Entry
134311279 CDS
T09921
Symbol
cpdp
Name
(RefSeq) CPD photolyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
trn03400
]
134311279 (cpdp)
Enzymes [BR:
trn01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
134311279 (cpdp)
DNA repair and recombination proteins [BR:
trn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
134311279 (cpdp)
Prokaryotic type
134311279 (cpdp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
134311279
NCBI-ProteinID:
XP_062848959
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All DBs
Position
4:1363495..1371479
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AA seq
533 aa
AA seq
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MLCVRSLIKSSSKNTSAFITSASLPASMAAKKKALKRKLEPVKGQQKLVKLGAEGSTQSG
WLQEKVDELRKDSSDLQFNQDRVRFLSDYQKVKQGTDGVMYWMFRDQRVQDNWALIYAQQ
LALKENLPLHVCFCLVPRYLEYTYRQYAFMLKGLQVVAKECQSLDIQFHLVKGEPKQVVP
GFVKDWNVGALVTDFMPLRLPLQWFKSIKKQLPSDVPFIQVDAHNVVPCWEASNKLEYGA
RTIRGKIHKLVPKFLTEFPLLDTHPHPSKKTAKKVDWEKVMSSLEVDRSLGEVSWAQPGA
AAGMAMLESFIDQRLGIFAAQRNDPNAEALSQLSPWFHSGQLSTQRALLAVQRWGKRHSD
SVSSFTEELLVRRELADNFCYYNENYDNIQGAYDWAKTTLKIHAKDPRQYVYTRKQLEDS
KTHDPLWNAAQRQLRIEGKLHGFMRMYWAKKILEWTASPEEALEIALYFNDHFALDGCDP
NGYVGCMWSICGIHDQGWAERAIFGKVRYMNYAGCKRKFDVAKFESKYAVKKA
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgtgtgagaagcctcataaagtcttcgagtaaaaacaccagcgcatttataaca
tctgcatctcttccagcgagcatggctgcgaagaaaaaagcactaaagcgtaagttagag
ccggtgaaaggccagcagaagctggtgaagctgggggcggagggatcgacacagagcggc
tggctgcaggagaaagtagacgagctgcggaaggattcttccgacctacaattcaaccaa
gatcgcgttcggttcctctctgactatcagaaagtgaagcaggggaccgatggggtgatg
tactggatgttccgggaccagagagtgcaagataactgggcgctgatatacgcccagcag
ctggcgctgaaggagaatcttcccctgcacgtctgtttctgcctggtgccgcggtatctg
gagtacacctaccgccagtacgccttcatgctcaagggactgcaggtggttgccaaggaa
tgccagagtctggacattcagttccacctggtgaaaggtgagcccaaacaagtggtgccc
ggattcgtcaaagactggaacgttggtgcgctggtgacagatttcatgcccctcaggctc
ccgctgcagtggttcaaaagcatcaaaaagcagcttccatctgacgtccccttcatacag
gtcgacgcccataacgtggtgccgtgttgggaggcgtcgaacaagctggagtacggcgca
cggacgatcagagggaagatccacaaactcgtcccgaagttcctcacggagttccctctg
ttggatacccacccacacccctccaaaaaaacagcgaagaaggtggactgggagaaagtg
atgtcgtctctggaggtggaccgcagcctcggcgaggtttcgtgggcgcagccgggcgcg
gccgcgggcatggccatgctcgagtcgttcatagatcagcgcctgggtattttcgccgcg
cagaggaacgacccgaacgccgaggcgctcagccagctctcgccgtggttccactcaggt
cagttatccactcagcgcgccctgttggcggtgcagcgttgggggaaacgccattctgac
tccgtgtcctcgttcaccgaggagctgttggtgcgcagagaactcgccgacaacttctgc
tactacaacgaaaactacgacaacatccagggtgcgtacgattgggcgaagacgacccta
aagatccacgccaaagacccccggcagtatgtgtacacacggaagcagctggaggactcc
aagacgcacgacccgctctggaacgccgcccagaggcagttacgcatcgaggggaagttg
cacggtttcatgcgcatgtactgggctaaaaagatcctggagtggacagcctcgcccgag
gaggctctggaaatcgccctctactttaatgaccacttcgccctggatggctgcgacccc
aacggatacgtaggctgcatgtggtccatctgcggcatccacgaccagggctgggccgag
cgcgccatattcggcaaagtgcgctacatgaactacgccggctgcaagcgcaagttcgac
gtggccaagttcgaaagcaagtacgccgtgaagaaagcctga
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