Trichomycterus rosablanca: 134311310
Help
Entry
134311310 CDS
T09921
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
trn03000
]
134311310 (rc3h1b)
04121 Ubiquitin system [BR:
trn04121
]
134311310 (rc3h1b)
Transcription factors [BR:
trn03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
134311310 (rc3h1b)
Ubiquitin system [BR:
trn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
134311310 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_3
zf-CCCH
Prok-RING_4
zf-C3HC4_2
zf-CCCH_4
zf-CCCH_UNK
zf_CCCH_4
FYVE
zf-RING_6
Baculo_IE-1
zf-RING_10
RING_XB3-XBAT31
Sina_RING
Motif
Other DBs
NCBI-GeneID:
134311310
NCBI-ProteinID:
XP_062849004
LinkDB
All DBs
Position
4:3647090..3659998
Genome browser
AA seq
1110 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLSKLHRKACPFDQTAISTD
IEQLPVNSALLQLVGAQVPKQPPVALITGPEDTKHYDEARQCVEELALYLKPLSSTRGVG
LGNAAQSVLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVKTVVHGLVDFIQNHSKKGVEQQQPAQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQDELEKYRKMNKRLAPRLPCGLLPEEGIPLEGVARKPPPMT
NGIVGPCPVPSPQLLARGHEASSYELIRKPKMEPGSLSAPGSPPDLMDKTGLPLPPHAVS
HPRAEHLPVSKQIPGVARGAPAMYPQQQPELFYPETRAPSGAPYDSQYPAGTPYPYQPPQ
YVPPRYIRNPLPPGDAPYQDPYPTYGPERHYPPSHHSFLGHPYPPPSHYDSRRHGPYPAP
PPPPHTQPFGPSRDDLVRMSPGPLDVPPATPAVPGSLYHSEATSRERYPPEGYYLPTPHP
GQIRSHIRDPYGRPQPSLDYLHRRRKELLNQLEERKVISPPPFAASPTLPTHAFPNDYPQ
EYIEDGHKAFSTREPDYAGQYSPWSCDTIGSYIGSKEPKPKDAVPAGVEMMNTEGKVLRE
PARSGEAKDDDPIIPFGPLPTVSPFGAISRTSKTGCQITGPVQAMASSQASGSKHIPTAA
DYGNHGGWGGVSYPQHQSVASSGHLSERYERVISNRGASVHPFVLPVSTPDREQLKMELQ
QVNQQISQQTQIRSMEAASNSMLLQREASALNSQPAGAKWATGGAVSSEQLSLELHHVER
EIGKRTREIAMENQAAHEVQYKLKTAENGQTNHKAPLDELSLALGDASNGSNSVGDSMLS
LTNKTSSLSLCPGEQAGSGPEPRKNGVAHA
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtccaagcgccacaatggaccgagttcctgctgtgtcccatctgcacgcagacg
ttcgaggagacggtgcggcggcccatcagcctcggctgcggccacaccgtctgcaagatg
tgcctgagcaagctgcaccgcaaggcctgccccttcgaccagacggccatcagcacggac
atcgagcagctgcccgtcaactcggccctgctgcagctggtcggcgctcaggtgcccaaa
cagccgcctgtggcactcattactggtccggaggacaccaagcattacgacgaggctcgg
cagtgtgtggaagagctggccctctacctcaaacccctcagcagcacaagaggtgtgggg
ctgggtaatgccgcacagagcgtgctcagcaggcccatgcagaggaagctggtcaccctg
gtgcactgccagctggtcgaggaggagggtcgagtccgtgccatgcgtgccgctcgctca
ctgggagagcgcaccgtcaccgagctcatcctgcagcatcagaacccccagcagctctcg
tccaacctgtgggccgccgtccgggcccggggctgccagtttctgggcccagccatgcag
gaggaggccctgaaactggtacttctggctctggaggacggttctgccttgtccagaaag
gttctggtgctttttgtggtgcagcgtctcgagcccaggttcccacaggcctccaaaacc
agtatcggacacgtggttcagctactttaccgtgcctcctgctttaaagtcaccaagcga
gacgaggactcgtccctaatgcagctgaaggaggagttccgaacctacgaggccctgcgt
agggagcacgactcccagatcgttcagatcgccatggaggggggcctgcgcatcgctcct
gaccagtggtcgtccctgctttacggggaccagtcccacaaatcccacatgcagtccatc
atcgacaagttgcagacgcctgcgtcgtttgcccagagcgtccaggagctgaccatagcg
ttgcagaggacgggcgaccctgccaacctgaaccgactcaggcctcatttagagctgctg
gcgaacattgaccccagtccagacgcccctcctccgacgtgggagcagctggagaatggt
ctggttgcggtaaagacggtggtccacggcttggtggacttcatccagaaccacagcaag
aaaggcgtcgagcagcagcagccggcgcagcacagcaagtacaagacctacatgtgccgc
gacatgaagcagaaagggggatgcccgcgtggcgccagctgcaccttcgcccactcgcag
gacgagctcgagaagtaccgtaagatgaacaagcgtctggctccgaggcttccgtgtggt
ctgctccctgaggaaggaatccctctagaaggtgtggcccgaaagccgccccccatgacc
aacggcatcgtagggccatgcccagttccgtcgccgcagcttctggcacgcggccacgag
gcttcatcctacgagctcatacgcaagcccaagatggagcccggcagcctgagcgccccc
ggatcgcccccagacttgatggataagaccggcctgcctctgccgccccacgccgttagt
catccgagggctgaacacctccccgtgtccaagcagatacccggagtggctcgaggtgcg
ccggccatgtacccccaacagcagccggagctcttctacccagaaaccagggcgccgtcg
ggagcgccgtatgattctcagtaccccgccggtaccccatacccctaccaaccacctcaa
tatgtgccaccacgctacatccgtaacccactgccccctggagatgctccctaccaggac
ccgtaccccacttacggtcccgagcgccattacccaccgtctcaccattccttcctgggc
cacccgtacccgccgccgtctcactacgactcccgccgacacggcccgtacccagcgccg
ccccctccgccacacacgcagcccttcggcccctctcgagatgacctggtgcgcatgagc
cccggacccctggacgtaccacccgccaccccagccgtgcccggatctctgtaccactct
gaggccacgtccagggagagataccctcctgaggggtactacctgcccacgccacaccct
ggccaaatcaggtcacatatcagggacccatatgggcgcccccagcccagcctggactac
ctgcaccgcaggcgcaaggagcttctgaaccagctggaggaaagaaaagtcatctctcca
ccaccatttgcggcctcccctactctgcccacgcacgctttccctaatgactatcctcaa
gagtacatcgaggacggtcacaaagccttcagcactagagagcctgactacgccggccag
tactcaccgtggtcatgtgacaccatcggctcgtacatcggctccaaagagcccaaaccg
aaggacgccgtgcctgccggcgtggagatgatgaacacagaggggaaggtcctgcgtgag
ccggcgcgctcaggggaagccaaagacgacgatcccatcatccctttcggccctctgccc
acggtgtcgcccttcggcgccatctcccgtacgtccaaaacgggttgccagatcacggga
ccggtgcaggccatggcgtcctcgcaggcttccggctccaaacacatccccacggcagca
gactacgggaaccatggcggttggggcggtgtgtcctaccctcagcaccagagcgtcgcc
tcttccggtcacctcagtgaacggtatgaacgtgtgatctcaaaccgtggagcctctgtg
cacccctttgtgctgcccgtgtccactcctgatcgagagcagctcaagatggagctccag
caggtcaaccagcagatcagtcagcagacgcagatccgcagcatggaggctgccagtaac
tccatgctgctgcagcgagaggccagtgcgctcaactcccagcctgcaggggctaaatgg
gccacagggggcgccgtgtcgagtgagcagctcagcctcgagctccaccacgtggagagg
gagatcggcaaacggacacgagagatcgccatggagaaccaggcagcacatgaggttcaa
tacaagctgaaaaccgcagaaaatggccaaaccaaccataaagccccgctggacgagctc
tctctggcactaggtgacgcctcgaatgggagcaacagtgtcggggactccatgttgtcc
ctgaccaacaagacgtcgtctctcagcctttgccccggggagcaggccggtagcggcccg
gagccccgaaagaacggcgtggctcatgcttag
DBGET
integrated database retrieval system
