Trichomycterus rosablanca: 134311370
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Entry
134311370 CDS
T09921
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn04115
p53 signaling pathway
trn04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
134311370 (cop1)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
134311370 (cop1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
trn04121
]
134311370 (cop1)
Enzymes [BR:
trn01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
134311370 (cop1)
Ubiquitin system [BR:
trn04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
134311370 (cop1)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
134311370 (cop1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
zf-C3HC4_2
Beta-prop_RIG_2nd
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
zf-C3HC4
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
zf-RING_2
Beta-prop_EML
Beta-prop_DCAF4
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
Beta-prop_WDR90_POC16_2nd
zf-RING_5
RING_XB3-XBAT31
WD40_RFWD3
WD40_like
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_DCAF12
Beta-prop_NUP159_NUP214
zf-rbx1
UvrD-helicase
WDR90_beta-prop_4th
Sina_RING
zf-RING_10
zf_C2H2_10
CREPT
Tma16
Motif
Other DBs
NCBI-GeneID:
134311370
NCBI-ProteinID:
XP_062849082
LinkDB
All DBs
Position
4:8127149..8159757
Genome browser
AA seq
690 aa
AA seq
DB search
MSGCRQQPQQQQQSGSGSGSAPGTSSGTTAAASMANKSSSSASAKVFCFREVGSDDMHVL
CSQKAGASNSRKRPLYNGLIHPYEDKSNDFVCPICFDMIEEAHMTKCGHSFCYKCIRRSL
EDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQRCEEKRVKRDHPNGTKWQYFQDVLGP
EQENLDLANVNYMLELLVQKKKQLEAESQAAQRQILMEFLKEARRNKREQLEQLQKELNF
LEEDIKSVQEMSGLYSPVVDMDPNLDSTVPQFGEANSPAPSSSMVEPTEYIQPPQFGGSA
QGKRQTSYNSTLASRRKRLTAHFEDLEQCYFSSRMSGITDDSRTVNQLDDFMECLSKFTR
YNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVFEYGTVIQDAVDIH
YPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDF
NLMDPKLLASGSDDTKVKLWSTNLDNSVASIEAKANVCCVKFSPTSRYHLAFGCADHCVH
YYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLKLWNVNKPHCLRSFKGHIN
EKNFVGLASNGDYVACGSENNSLYLYYKGLSKMLLTFKFDTVKSVLDKDKKEDDTNEFVS
AVCWRALPDGESNVLIAANSQGTIKVLELI
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgtctggctgtcggcaacaaccacaacaacagcagcagtccggctctggttcggggtct
gcaccgggaaccagttctggcaccaccgctgctgctagcatggctaataagagcagtagt
agcgccagtgctaaagtattctgttttcgagaggtgggttcggacgacatgcatgttttg
tgctcgcagaaagccggagcgagtaacagcagaaaaagaccactttataacggtcttatt
catccttatgaagataagagtaacgactttgtctgtcccatatgttttgacatgattgaa
gaagctcacatgacaaaatgtggccacagtttctgttacaaatgtatacgacggagtttg
gaggacagtaacaggtgtccgaagtgtaattacattatcgataacgtggatcaactatac
cctaacttcttagtaaacgagctgatcctcaagcagaaacagagatgcgaagaaaagcgg
gtgaaacgggaccaccccaacggaacaaaatggcagtatttccaagatgttcttggcccg
gaacaagagaatctggatttagcaaacgtcaactacatgttggaactcctagtgcagaaa
aagaagcaacttgaagcggaatctcaagcagcgcagcgtcaaatcttgatggagttttta
aaagaagctagacggaataaaagagagcaactggagcagttacagaaagagctaaatttc
ctggaagaggacataaaaagtgttcaggaaatgagtgggttgtactcgccagtggttgac
atggaccctaatttggacagcactgttcctcagtttggggaagctaactcccctgctccc
agcagtagcatggtagaacctacagagtatatccagcctccacagtttggtggaagcgca
caggggaaaagacagacatcgtacaacagcactttggcctcacgaagaaagagactaacg
gctcactttgaggacttggagcagtgctacttctctagcaggatgtctggaattacagat
gatagcaggactgtcaaccagctggatgacttcatggagtgcctgtccaagttcacacgt
tataactcggtgcgccctctggccactttgtcttatgcaagtgacctctacaatggctct
agtattgtttctagcattgagtttgaccgtgactgtgattacttcgccattgccggtgtc
accaagaagatcaaagttttcgaatacgggactgtgatccaggatgctgtggacattcat
tatcctgttaacgaaatgacgtgcaactccaaaatcagctgtatcagctggagcagttat
cacaaaaacctactggcgagcagcgactatgagggaacagtaatcctttgggatggcttc
actgggcagaggtcgaaggtttatcaggagcatgaaaagagatgttggagtgttgatttt
aacctcatggatcccaaacttttggcctcaggctcagatgatacaaaagtcaaattgtgg
tctacgaacctggacaactcggttgcaagcatagaagcaaaggccaatgtatgctgtgtc
aaattcagtccaacatctcggtaccatctcgccttcggttgtgcagaccactgcgttcat
tattatgatctgaggaacactaaacagcccatcatggtgttcaaaggtcatcggaaggcc
gtgtcctatgccaagttcgtcaacggagaagagatcgtgtctgcctccacagacagccag
cttaagctgtggaacgtgaacaagcctcactgtctgcgctccttcaaaggccacatcaat
gagaagaacttcgtgggtctggcctccaacggagactatgtagcatgtggaagtgaaaac
aactccctgtacttgtactacaaggggctatccaaaatgttgctgaccttcaagtttgac
actgtaaagagcgtgctggacaaggataagaaggaagacgacactaacgagttcgtcagt
gccgtctgctggcgggctcttccagacggggagtctaatgtgctgattgcagctaacagt
caaggaacaatcaaggtactcgagctgatttga
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