Trichomycterus rosablanca: 134311589
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Entry
134311589 CDS
T09921
Symbol
ambra1b
Name
(RefSeq) activating molecule in BECN1-regulated autophagy protein 1B isoform X1
KO
K17985
activating molecule in BECN1-regulated autophagy protein 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn04137
Mitophagy - animal
trn04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
134311589 (ambra1b)
04137 Mitophagy - animal
134311589 (ambra1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134311589 (ambra1b)
03029 Mitochondrial biogenesis [BR:
trn03029
]
134311589 (ambra1b)
Membrane trafficking [BR:
trn04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
134311589 (ambra1b)
Mitochondrial biogenesis [BR:
trn03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
134311589 (ambra1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
EIF3I
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
134311589
NCBI-ProteinID:
XP_062849308
LinkDB
All DBs
Position
1:complement(44343266..44365973)
Genome browser
AA seq
1330 aa
AA seq
DB search
MAVQNRNAVLVLSRRERGAQMLGSKRLLQQLVEDRTRWMKLDSQKVELPDNPRSTFLLAF
SPDRNLMASTHVNHNIYITDVKTGKCLHSLVGHRRTPWCLTFHPTIPGLVASGCLDGEVR
IWDLHGGSESWFTEGNIAIASLAFHPTAQLLLIATNNELHFWDWSRPEPFAVVKTGSETE
RVRLVRFDPLGHNLLTAIVNPSNQQNDEDSEVPVDSVDVALFRQRSLLRSPPVRRTPILH
NFLHILSSRSSGVHTGDQSRPVSESRETPSSMPLFQYPGRSELPDRPPQQSCTQHLGLGC
LCSRCAAASRNVQNPSSMQTTDSTHSFPHPHSQLPSQPRPTTDRPSAFSSVHSSTAGSSL
HRGLSSLRTSIAMSGAPEPSARLPAADWSRNLLGTGSELTLGDATTSIVGRGVLPPPRTS
SSSVGLHRYPDSSSSLSSSPIYTSATEGRGLPLPGADPRQGRSSDGTSSGHHPFYDGAQR
NNSIRNVLQCNLSRYFMEYERMQDLERSGSGREAGTQGPVQEMLASSMESERAGPSHRSS
AHAADGTNSGSQQHNHPNRCRSCNNLLSFNHDTQRWERSSQASSASAQEAPPWQLPEPPF
EVHAQTSREEPHPPEEPQQPIQSQHPMGLVYNQDTGQWERVYQQATTNPSTEAAQEALNP
DVPVDSADEDSLRRRLLESSLFPFSRYDMSGSRDHPIYPDPARLSPAAYYAQRMIQYLSR
RESIRQRSLQNRLRTLSTSSDNQGSNPSSTPADGSDADYEEIEEPGDRTRHRMPRNARMS
APSLGRFVPRRFLLPEYLPYAGIFHERGQSGLATHSSINRVLAGASIGDNQSAVASNIAN
TTYRLQWWDFTKFDLPEISNASVNVLVPNCKIYNDASCDISADGQLLAVFIPSSQRGFPD
EGILAVYSLAPHNLGETLYTKRFGPNAISVSLSPMGCYVLVGLASRRILLHPTTDHIVAQ
VFRLQQPHGGETSIRMVYPVTYPMAPDQRRHVSINSARWLPEPGMGLAYGTSKGDLIICR
PVDYRNDGDSSSDHSSDPLFNISSSSSRTRGVERPGTSRSAWRLDRDMGLMSAIGLQPRQ
PAPSVTSQGTQTPIVRLQNAETQTERELPSTSSLQTTHTQQHLADSSQMQTTSTETLPHS
AMPYAHTHGAASHDSSTLTDSLSTNQAESQVDPGPSEDALSRIRRLMAEGGMTAVVQRER
STTMASMGGFGNNIVVSHRIHRGSQTPAGASQSSNPSGAGESSLDTRLTMFSDSSDNPAE
MPSTSALPSSSTGTALEASSSSVPVEDMVEDGQIEEPHPSSSLYMSNISNNNNNNHEGSS
RDYPDDLYSR
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgcaaaacaggaatgctgtgttggtcctgtcgaggcgagagcgtggagctcag
atgttgggctccaagcggctgctgcaacagcttgtggaggacaggacacgctggatgaaa
cttgatagtcagaaagtggagcttccagataaccctcgatccacatttttgttggccttc
agcccagacagaaatctcatggcctctactcacgtcaaccacaacatctacatcacagat
gtgaagacagggaagtgcctgcactctttagtcggtcatcgacggacaccatggtgtttg
acctttcatccaaccattcctggccttgtggcttctggttgccttgacggagaagtccgc
atctgggatttacatggtggcagtgagagctggtttacagaaggaaacatagccattgcg
tccttggctttccaccctacagcccagctgcttctaatcgccactaacaatgagctgcac
ttttgggactggagccgacctgagccctttgctgttgttaagactggcagtgagactgag
cgtgtcaggcttgtgcggtttgatcctcttggtcacaatcttttgacagctattgtgaat
ccatcaaaccagcagaatgatgaggactctgaagttccagtggacagcgtggacgtggcg
ctgttccgtcagcgatcgcttctccgctccccaccagttcgtcgtactccgattttgcac
aacttcttacacatcctttcctctcgttcctctggagtgcatactggtgatcagtcccgg
cctgtttcagaatctcgggaaaccccatccagtatgcctctgttccagtaccctggacgg
agtgagctcccagaccggcctcctcagcagagctgcactcagcacctggggcttgggtgc
ctgtgcagccggtgtgctgctgcctctcgaaatgttcagaacccctcatccatgcagaca
acggactctacacactcttttcctcacccacactcgcagcttcccagccaaccacgtcct
acgacagacaggccttctgcttttagcagtgtgcatagcagcactgcagggagctcgcta
caccgtggcctgtcatctctcagaactagcattgctatgagtggcgctccagagccatct
gctcgtttgcctgctgctgactggtctagaaacttgcttggcacaggctctgaacttaca
ttaggcgatgcaacaacaagtattgttggcaggggtgttttgccacctcccagaaccagt
tcctcttctgtgggtctgcacaggtacccagacagctcttcctccttgtcctcctcacct
atctacacttcagccaccgagggtcgcggtctgcctctgccaggtgctgaccccagacag
ggcagatccagtgacggaaccagcagtgggcatcaccctttctatgacggggctcaacgg
aataactccattcgaaatgtgctccaatgcaacctgagccgctactttatggaatacgag
cgcatgcaggacctagaaagatcaggctctggccgtgaggcaggcacacagggaccagtg
caagaaatgctagcaagcagcatggaatcagagagagcaggcccttcccaccgaagctct
gctcatgctgcggatgggaccaacagtggcagccaacagcacaaccatccaaaccgctgc
cgctcatgcaacaatcttcttagcttcaatcacgatacccagcgctgggagcgttcaagc
caggcttcctcagcttcagctcaagaggcacctccctggcagctgcccgagcctcctttt
gaggtgcatgcccagacttcaagagaagaaccccatcctccggaagagccgcaacagccc
attcagagtcagcacccaatgggtctggtgtataatcaggacactggccagtgggagcga
gtgtatcagcaggccacaaccaacccctccactgaagcagcacaagaagccttaaaccca
gacgtgcctgtggacagtgctgatgaggactctctcagaaggaggctcctggagtcttca
cttttccctttctcccggtacgacatgtccggttcccgtgatcatcctatctacccggat
ccggccaggttgtctcctgcagcgtattatgctcagaggatgatccagtatctgtctcga
agggaaagcattcgtcagcgttccctacagaatcgactgcgtacgctctccacctcctcc
gacaaccagggtagcaatccttcatccacaccagcagatggcagtgatgcggactatgag
gagatagaggaaccaggagatcgtacaagacacagaatgcctcgcaacgcacgaatgtct
gcaccctcccttggccgctttgttccaaggaggtttctgttgcctgaatatcttccttat
gctggcattttccatgagagagggcagtcaggcctggcaacacactcatcaatcaacaga
gtgttagcaggggcatcgattggtgataatcagtctgcagtagccagtaacatagccaac
accacttacagactgcagtggtgggatttcactaagtttgacctgcctgagatcagcaat
gcctctgtgaatgttctggttccaaactgcaagatctataatgatgccagctgtgatata
tcagctgatgggcaactgttggctgtgttcatacccagcagtcagcggggctttccagat
gagggcattctagctgtttactctcttgcccctcacaacctgggagagacgctctatact
aagcgatttggtcccaatgctatctctgtgagcttgtctccaatgggctgctacgttctg
gtgggtctggcctctcgcaggattctgctccatcctaccaccgaccacatagtggcgcaa
gtgttccgcttacagcaaccgcatggtggagaaacctccattaggatggtgtatcctgtt
acataccccatggctccagaccagcgtagacatgtgagcattaactctgctcgctggctg
cctgaacctggtatgggcctggcttatgggaccagcaagggggacctaatcatctgcaga
cctgtcgattaccgaaatgatggagacagcagttctgatcatagctcagatcctctattc
aacatcagcagcagcagcagtcggacacgtggagtggaacgaccaggtacgagtaggtct
gcttggcggttggacagggacatgggtctgatgagtgccattggcttgcagcctcgacaa
cccgctccctcagtgacctcacaagggacacagacacctattgtgcgtctacagaatgca
gagactcagacggagagagagctgccttcaacaagttctttacagactacacacacacaa
caacacttggcagacagtagtcagatgcagactaccagcacagagacactcccacatagt
gcaatgccatatgcacacacccatggagctgcatcccatgattcctctactcttactgac
tcactaagcaccaatcaagctgagtctcaggtggatcctggcccaagtgaagacgctctg
tctaggatccggcgtctgatggcggagggtgggatgactgcagttgtccagagggagcgc
agcaccaccatggcctccatgggaggttttggcaacaacattgtggtgagccacagaata
catcgtggctctcaaaccccagcaggagcatcacaatcaagcaacccatcaggcgcagga
gaaagcagcctagacacaagacttactatgttctctgactcctctgacaatcctgcagaa
atgccctctacatctgctcttccctcttcaagcactggtactgcgttagaggcttcctct
tcatctgtgcctgttgaggatatggttgaggacggtcagattgaagagccccatccttca
agcagtttgtacatgtctaacattagtaacaacaacaataacaaccatgaaggtagcagc
agagattacccagatgatctatacagcagatag
DBGET
integrated database retrieval system
