Trichomycterus rosablanca: 134312012
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Entry
134312012 CDS
T09921
Symbol
sin3aa
Name
(RefSeq) SIN3 transcription regulator family member Aa isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
trn
Trichomycterus rosablanca
Pathway
trn04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
134312012 (sin3aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
trn03036
]
134312012 (sin3aa)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
134312012 (sin3aa)
REST complex
134312012 (sin3aa)
Heterochromatin formation proteins
Other heterochromatin formation proteins
134312012 (sin3aa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
134312012
NCBI-ProteinID:
XP_062849729
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All DBs
Position
1:complement(46940176..46987016)
Genome browser
AA seq
1265 aa
AA seq
DB search
MKRRLEDQEVFAAQQRRPLGGIETYQHRVLAPAVYEAVSDNVQPTAGIQYPVPQGYQVST
VTQSSGSHGHTPNTAVHSSSHHHSPAVQPHGPALVQSHAHPPNPTASAQGQQQFQRLKVE
DALSYLDQVKLQFGSQPQVYNDFLDIMKEFKSQSIDTPGVISRVSQLFKGHPDLIMGFNT
FLPPGYKIEVQNNDLVNVTTPGQIHHITPHGISVQNIPLAAPAQHQSHLNAQTSGTGAPP
SQPSQKTKLLQSPALTPSSQPNPSIPPYASPRSPPHHPHTPISSTPNAPPLQNNQPVEFN
HAINYVNKIKNRFQGQPDIYKSFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARL
FKNQEDLLSEFGQFLPDASSSVLLGKTTAEKVESVQNDHGSTVKKPQLNNKQRPNQNGCQ
MRRHSGNPATTPPVKKKPKLLNLKEPPTAEATKHGVGTESLFFEKVRKALRSAEAYDNFL
RCLVIFNQEVISRAELVQLVLPFLGKFPELFTWFKNFLGYKEMSHLETYPKERATEGIAM
EIDYSSCKRLGFSYRALPKSYQQPKCTGRTPLCKEVLNDTWVSFPSWSEDSTFVSSKKTQ
YEEHIYRCEDERFELDVVLETNLSTIRVLESVQKKLSRMPAEEQAKFRLDNTLGGTSDVI
HRKAIHRIYGEKALDIIDGLKKNPAISVPIVLKRLKLKEEEWREAQRGFNKIWRQQNEKY
YLKSLDHQGINFKQNDTKVLRSKTLLNEIESIYDEHQEQASEENGTPPSGPHLTFTYDDR
QILEDAAALIIHHVKRQTSIQKEDKYKIKQIIYHFIPDLLFSQRGVLSDAEEEEEDEEDA
DLDEGDLKKHNGVTGSPSKSKLLFNNSAAQKLRSCDDAYNLFLVNNNLYIFFRLHQTLCT
RLLRLYTQAERQIEEELRERDWEREVLGLKRDKNDNPAVQLRLKEPMDIEVEDYYSAFLE
MVRSMLDGNMEASLYEDSLREMFTIHAYIAFTMDKLIQSIVRQLQHIVSDELCVQVTDLY
LSESSSNATGGSLTTQTSRATAEGAYQRKAEQLMAEENCFKLMFVKNHENVQLMIELLDT
EEENSDEQVETDRWSDYVGRYLSADVTSPELREHLSQKPVFLPRNLRRIRKYQRGREQLE
KEIKEGDKKENAENMKMECMFKLNSYKMVYVFKSEDYMYRRTALMRAHQSHEHVSTKLHQ
RFQTWLDGWQKEHVKEHMATDTTKWLMGDRREGLLPCTTAKEPEILHFRTVNKYRVKYSN
SFKTP
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggcgtttggaggatcaggaagtctttgcggcgcagcagcgcaggccgctggga
ggcattgagacctaccagcacagggttttggcaccagcggtgtatgaggctgtatctgac
aatgtccagcccactgcaggcattcagtatccagttccccagggctaccaggtttccact
gtgacgcagagttctgggagtcatggccacactccgaacactgctgttcacagcagctct
caccaccacagccctgctgtgcagccacacggccctgcgctggtccagagtcacgctcac
ccacccaatcccactgcttctgcacagggccagcagcagttccagagactcaaggttgag
gacgctttgtcctacctggaccaagtcaagttgcagtttggaagtcagccacaagtttac
aatgactttctggacatcatgaaggagtttaagtcacagagtattgacacccctggtgtg
atcagtcgagtgtcgcagctgtttaagggtcacccagacctcattatgggcttcaacacc
ttcctgccacctggatataaaattgaggtgcagaacaacgacctagtgaacgtcaccaca
ccgggtcagatccaccacattacaccacatggcatatcggtgcagaacatccctctagca
gctccagcacagcaccagagtcatctgaacgctcaaacttcgggtactggtgcccctcca
agccagccatcccagaaaaccaagctgttgcaatctccagcactgacgcctagcagtcag
cccaatccatccatccccccatatgcctcacctcgttctcctcctcaccatcctcacacc
cccatcagcagcacccccaacgccccacccctgcagaacaaccagcctgtggagtttaac
cacgccattaactacgtcaacaagatcaagaaccgcttccaaggccagccagatatctac
aaatccttcctggagatccttcacacataccagaaggagcagcgtaatgcaaaagaggcg
ggaggaaactacaccccagctcttaccgagcaggaggtttatgcccaggtggcgagacta
tttaaaaaccaggaggacctgttatcagagtttggccagttccttccagatgccagcagc
tctgtgctgctgggcaagacgacggctgagaaggtagaatcggtgcagaatgatcacgga
agcacagtaaagaagccacagcttaacaacaagcagaggccgaaccagaacggctgtcag
atgcgccgacactctggaaaccctgcaaccactccaccagttaagaagaagcccaagtta
ctgaacctgaaggaaccacccacagcagaagccactaagcacggagttggcacagagtct
ctgttctttgagaaggtgcggaaagccttgcgaagtgctgaggcctacgacaatttcctg
cgctgcctggtcatctttaatcaagaggtgatatcacgagccgagctcgtacaactggtg
ctgcctttcttggggaagttcccagagttgtttacctggttcaagaacttcttgggctac
aaggagatgtcacatttggagacctaccccaaagagcgtgctacagagggcatcgccatg
gaaatcgactactcatcatgcaaaagattgggcttcagttacagagcactgcccaagagc
taccagcagcccaaatgcacagggagaaccccactatgtaaagaggtgcttaatgacaca
tgggtgtcatttccttcgtggtcagaagactccactttcgtcagctcaaagaagacacag
tatgaggagcatatttacagatgtgaggatgagcgctttgagctggatgtggttctggag
acgaacctgtctactatccgggtgctggaatcagtacaaaagaagctctcgcgcatgccc
gctgaggaacaggctaagttccgattggataacacgcttggtggcacgtctgatgtcatc
cacagaaaagctatccaccggatatacggagaaaaagccctagacatcattgatggactg
aagaaaaatccagcaatctctgtccccattgtgcttaagaggttaaaactgaaggaggag
gagtggagagaagcacaacgaggctttaataagatatggcgccagcagaacgaaaaatat
tacttaaagtctcttgaccatcaaggcattaacttcaagcaaaacgacaccaaggtgcta
cgctccaagactctcctcaacgagatcgagagcatctatgatgaacaccaggaacaggcc
tctgaggaaaacgggacgccccccagtggccctcacctcaccttcacttacgacgaccgg
caaattctagaagatgccgccgccctcatcatccaccatgtcaagagacagaccagcatc
caaaaagaggacaagtacaagatcaagcaaatcatttaccacttcatccctgacctgctt
ttctctcaacggggggtgctgtcagatgccgaggaggaagaggaggacgaagaggatgct
gacctggatgaaggagacttaaagaagcacaacggcgtaacgggaagccccagcaagtcc
aaactgctctttaacaactcggcagcgcagaagcttcgctcgtgcgatgacgcctacaac
ctgttcctagtcaataataacttgtacatcttcttccggctgcaccagactctgtgcaca
cggctcctacgactgtacacgcaggccgagcgccagatcgaggaggagctgagggagagg
gactgggaaagggaggtgctcggacttaaacgagacaaaaacgacaaccctgctgttcag
ctccggcttaaggaacccatggacattgaggttgaagactactactcagcctttctggag
atggtgcgcagcatgctggacgggaacatggaggcgtctctgtacgaggactctctgaga
gagatgttcacgattcatgcctacattgccttcaccatggacaaactgatccagagcatc
gtcaggcagctgcagcatatagtgagtgatgagctctgcgttcaggtaacagatctgtat
ctgtcagaaagcagcagcaacgccaccggcggctcacttaccacgcaaacttcgagagcc
accgctgaaggagcctaccagcgaaaagcagagcagctcatggcagaggagaactgtttc
aagttgatgttcgtaaagaatcacgagaatgtgcagttgatgattgagctgttggacacg
gaggaggagaactcagatgagcaagttgagacagaccggtggtccgattacgtaggccgg
tatctcagtgctgatgtgacgtcaccagagctacgagaacacctgtctcaaaagcctgtc
tttctacccagaaacctgaggcgaatccggaagtaccagcgtggacgtgagcagctggag
aaggaaattaaggagggagataaaaaggaaaatgcagagaacatgaaaatggagtgcatg
ttcaagctcaactcctacaagatggtgtacgtcttcaagtccgaggactatatgtaccga
cgcactgcactgatgcgagctcatcagtcacatgagcacgtgagcacgaaactgcaccag
cgcttccaaacctggctggacggctggcagaaagaacatgtgaaggagcacatggcaact
gacaccaccaagtggctcatgggagacaggcgggaagggcttctaccctgcacaacggcc
aaggaacccgagatccttcacttcaggaccgtcaacaagtacagagtcaagtacagcaac
agctttaaaacgccatga
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