Trichomycterus rosablanca: 134312043
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Entry
134312043 CDS
T09921
Symbol
copa
Name
(RefSeq) coatomer subunit alpha isoform X1
KO
K05236
coatomer subunit alpha
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
trn04131
]
134312043 (copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
trn04147
]
134312043 (copa)
Membrane trafficking [BR:
trn04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
134312043 (copa)
Exosome [BR:
trn04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
134312043 (copa)
Exosomal proteins of bladder cancer cells
134312043 (copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
134312043
NCBI-ProteinID:
XP_062849759
LinkDB
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Position
4:complement(166542..196968)
Genome browser
AA seq
1257 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRLW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETE
VRGITGVDLFGASDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMLVFKLERERPAYAVYGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG
SKNPVFSMSYNPAENAVLLCTRAANLENSTYDLYSIPRESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLYDVQQK
RSLATVKIAKVKYVVWSADTSHVALLAKHGTAPHNVTVIIRPVLTGHTLITVLLFYPSAA
IMICNRKLESLCNIHENIRVKSGAWDESGVFIYTTSNHIKYALTSGDHGIIRTLDLPIYV
TRVRGNSVYCLDRECRPRVLNIDPTEYRFKLALVNRKYDEVLHMVRNAKLVGQSIIAYLQ
KKGYPEVALHFVKDEKTRFSLALECGNIEVALEAAKALDDRSCWERLGEAALLQGHHQVV
EMCYQRTKNFDKLTFLYLITGNLAKLRKMMKIAEIRKDMSGHYQGALYLGDVSERVRILK
NCGQKSLAYLTAATHGMDEEAEALKETFDLEKEMIPEVDPNAQLLQPPPPINPLDTNWPL
LTVSKGFFEGVIAAKGKAGPMAADLDMDAPGGEGWGEDAELHLDEDGFVDAQEGLGDDGA
VGKEEGGGWDVEEDLDLPPELDVPAAGGGGAEGEGFFVPPTKGVSPAQQWCNNSQLPVDH
VLAGSFETAMRLLYDQVGVVCFEPLKPLFLQTFSRARVSYVGLPSLPCLFSHPLRDEGRK
QRDGQKGGVPAVGLHLRDLIARLQQCYQLTTGGRFDEAVEKFRSILLSVPLLVLDNKQEI
AEAQQLITICKEYILGLSMETERKKLPKESLEQQKRQCEMAAYFTHCNLQPVHMVLVLRT
ALNLFFKLKNFKTAAMFARRLLELGPKPEVAQQTRKILAACEKNLTDAHQLNYDPHNPFD
LCAASFTPLYRGRPVEKCPLSGACYCPTYKGQVCRVTQVTEIGKDVIGLRVSSLQFR
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgttgactaaatttgagactaaatctgctcgagtgaaagggttgagtttccacccgaag
agaccctggatcttggccagtctgcacaatggggtgatccagctctgggactatcgcatg
tgcaccctcatcgacaagtttgatgaacatgatggtccagtgagaggaatcgactttcat
aagcagcagcctctgttcgtctcgggaggagacgactacaaaataaaggtgtggaactat
aagctgaggcgttgcctcttcaccctgctcggacacttggactacatccgcaccaccttc
ttccaccatgagtacccctggattctgagcgcctcagacgatcagaccatccgactgtgg
aactggcagtccaggacgtgtgtgtgtgtcctgacgggacataaccactacgtgatgtgc
gctcagttccacccctcggaggacctggtggtgtcggccagtctggatcagacggtgcgg
gtgtgggatatttccggtttgaggaagaagaacctgtcccccggcgccgtggagacagag
gttcgtggcatcacgggcgtggatctgttcggggcctcggacgccgtggtgaaacacgta
ctggagggtcacgatcggggggtgaactgggcggcgtttcatcccagcatgcctctgatc
gtctccggggccgatgatcgtcaggtgaaaatctggaggatgaacgagtctaaggcgtgg
gagctggacacctgtagggggcactacaacaacgtgtcctgcgccgtcttccacccgcgt
caggaactcatcctctccaactctgaggacaagagcatccgggtgtgggatatgtccaag
aggaccggggtgcagaccttccgcagggaccacgatcgcttctgggtgctgggagctcac
cccaacctcaacctgttcgctgctggacatgacagtgggatgttggtgtttaagctggag
cgtgagcgccctgcgtacgccgtgtacgggaacatgctgtactacgtgaaggatcgattc
ctgcgccagctcgacttcaacagcagcaaagatacagcagtcatgcagctgcgcagtggt
tctaagaacccggtgttcagcatgtcctacaaccccgccgaaaacgccgtgctgctgtgt
acgagagcagcgaatctggagaacagcacctacgacctgtactccatcccccgcgagagc
gactcccagaatcctgatgctccagaaggtaaacgttcatcaggattaacagcggtgtgg
gtggctcgcaatcgcttcgccgtgctggaccgtatgcactcgctgctgattaagaacctg
aagaacgagatcgtgaagaaggttcaggtcccgagctgtgaggagatcttctacgcagga
accggatctctgctgctgagagacgctgacggggtcacgctgtacgacgtgcagcagaag
cgctcgctcgctaccgtcaagatcgccaaggtcaaatacgtggtgtggagcgcagacacc
agccacgtcgccctgctggccaaacatggtactgcacctcacaacgttactgtaataata
cggccagtcctgaccggccacaccctcataactgtactgctgttttatccctccgcagcg
atcatgatctgtaacaggaagttggagagtctgtgtaacatccatgagaacatccgtgtg
aagagcggcgcctgggacgagagtggagtgtttatctacaccacctctaaccacatcaaa
tacgccctcacctccggtgatcacgggatcatccgaaccctggacctccctatttacgtg
acgagggtgcgagggaacagcgtgtactgtctggatcgggagtgcagacctcgcgtcctc
aacatcgaccccaccgagtaccgcttcaaactcgccctggttaaccgcaaatacgacgag
gtgctgcacatggtgcgaaatgccaagctggtgggtcagtccatcatcgcgtacctgcag
aagaagggctacccggaggtggcgctacacttcgtcaaggatgagaagacccgcttcagc
ctggcgctggagtgtgggaacatcgaggtggcgctagaggcggcgaaggctctggacgat
cggagctgctgggagcggctgggtgaggcggcgctgttgcaggggcatcatcaggtggtg
gagatgtgctaccaacgtaccaagaacttcgacaagctcaccttcctctacctcatcacc
ggcaacctcgccaagctccgcaagatgatgaagatcgctgaaatcaggaaggacatgagt
ggacattatcagggtgctctgtatctgggggacgtcagtgagagggtgcgcatcctcaaa
aactgtgggcagaagtctctggcgtacctgaccgcagcgactcacgggatggacgaggag
gctgaagctttgaaggaaacctttgacctggagaaggagatgatcccagaggtggacccg
aacgcccagctcctgcagcctcctcctcccatcaaccctctggacactaactggcccctg
ctcaccgtctccaagggcttctttgagggagtcattgctgcaaaaggtaaagcaggtccg
atggcagctgatctggacatggatgctcctggaggagaaggatggggagaagatgcagag
cttcacctggatgaagatgggtttgtggatgctcaggagggtctgggtgatgatggagct
gtggggaaggaggaaggtggaggatgggatgtggaggaagatctggaccttccaccagaa
ctggatgttcctgctgctggtggaggcggagctgaaggagaaggcttctttgtcccgccc
actaaaggcgttagccccgcccagcagtggtgtaataactcccagcttcctgttgatcac
gttctggccggttcctttgagacggccatgaggctgctgtatgatcaggttggcgtggtc
tgcttcgagcccctgaagcccctcttcctgcagaccttctctcgtgcccgtgtgtcgtac
gtggggctgccctctctgccctgcctcttctcgcaccctctgagggacgagggccggaaa
cagagggacgggcagaagggcggagtacccgccgtggggctgcacctgcgtgacctcatc
gcccggctgcagcagtgctaccagctcaccaccggggggcgcttcgacgaggccgtcgag
aagttcaggtccatcctgctgtcggtcccgctactggtgctggataacaaacaggagatc
gccgaggctcagcagctgatcactatctgtaaggagtacatcctgggtctgagcatggag
acggagaggaagaagctccctaaagagagtctggagcagcagaagaggcagtgtgagatg
gcggcgtacttcacccactgtaacctgcagccggtgcacatggtgttggtgttgcgcacg
gcgctcaacctcttcttcaaactgaagaacttcaaaacagccgccatgttcgcccgccgg
ctcctggagctggggcccaaacctgaggtggcacagcagacccgtaagatcctggcggcg
tgtgagaagaacctgaccgacgcccaccagctgaactacgacccccacaatcccttcgac
ctctgtgctgcctccttcacccctctgtaccgaggacgcccagtagagaagtgccccctc
tccggagcctgctactgccccacctacaaggggcaagtgtgccgggtcacacaggtgact
gagatcggtaaggacgtgatcgggctccgcgtgagctccctgcagttccgctaa
DBGET
integrated database retrieval system
